Variant report

Variant	rs2214975
Chromosome Location	chr7:25817753-25817754
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10233419	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11770089	0.88[EUR][1000 genomes]
rs122505	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1376526	0.88[EUR][1000 genomes]
rs286688	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs286689	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs286690	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs286691	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs286694	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs286695	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs286696	0.88[EUR][1000 genomes]
rs7350035	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7779030	0.91[EUR][1000 genomes]
rs7798211	0.83[EUR][1000 genomes]
rs9639521	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016813	chr7:25405859-26150509	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
2	nsv538803	chr7:25405859-26150509	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:25815400-25819600	Enhancers	Psoas Muscle	Psoas
2	chr7:25815600-25818800	Enhancers	Fetal Muscle Leg	muscle
3	chr7:25815600-25819400	Enhancers	Skeletal Muscle Male	skeletal muscle
4	chr7:25816000-25825600	Weak transcription	Aorta	Aorta
5	chr7:25816600-25817800	Weak transcription	Fetal Muscle Trunk	muscle
6	chr7:25816800-25817800	Weak transcription	Fetal Stomach	stomach
7	chr7:25816800-25818200	Weak transcription	Adipose Nuclei	Adipose
8	chr7:25817400-25818000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr7:25817400-25818200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr7:25817400-25818400	Enhancers	Fetal Kidney	kidney
11	chr7:25817600-25818600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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