Variant report

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10233419	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11770089	0.87[EUR][1000 genomes]
rs122505	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1376526	0.87[EUR][1000 genomes]
rs2214975	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs286688	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs286689	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs286690	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs286694	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs286695	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs286696	0.88[EUR][1000 genomes]
rs7350035	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7779030	0.89[EUR][1000 genomes]
rs7798211	0.81[EUR][1000 genomes]
rs9639521	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016813	chr7:25405859-26150509	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
2	nsv538803	chr7:25405859-26150509	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
3	nsv830928	chr7:25820147-25965014	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs286691	TRIL	cis	cerebellum	SCAN
rs286691	TOMM7	cis	parietal	SCAN
rs286691	IL6	cis	cerebellum	SCAN
rs286691	KLHL7	cis	cerebellum	SCAN
rs286691	TAX1BP1	cis	cerebellum	SCAN

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:25819600-25827000	Weak transcription	Psoas Muscle	Psoas
2	chr7:25821200-25829600	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr7:25823000-25842800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr7:25824800-25829400	Enhancers	Fetal Stomach	stomach
5	chr7:25825200-25827600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr7:25825200-25827600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr7:25825200-25827800	Enhancers	Ovary	ovary
8	chr7:25825400-25827000	Weak transcription	Fetal Intestine Small	intestine
9	chr7:25825400-25829000	Enhancers	Fetal Lung	lung
10	chr7:25825600-25827800	Enhancers	Aorta	Aorta
11	chr7:25825600-25828400	Enhancers	Colon Smooth Muscle	Colon
12	chr7:25825800-25828600	Enhancers	Rectal Smooth Muscle	rectum
13	chr7:25826000-25827600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr7:25826200-25827200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr7:25826200-25827400	Enhancers	NHLF	lung
16	chr7:25826200-25828200	Enhancers	Fetal Muscle Leg	muscle
17	chr7:25826200-25828200	Enhancers	Stomach Smooth Muscle	stomach
18	chr7:25826400-25827200	Enhancers	Duodenum Smooth Muscle	Duodenum
19	chr7:25826400-25827600	Enhancers	Fetal Kidney	kidney
20	chr7:25826600-25828200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr7:25826800-25827800	Enhancers	Adipose Nuclei	Adipose

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