Variant report

Variant	rs10233419
Chromosome Location	chr7:25816899-25816900
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11770089	0.87[EUR][1000 genomes]
rs122505	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1376526	0.87[EUR][1000 genomes]
rs2214975	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs286688	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs286689	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs286690	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs286691	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs286694	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs286695	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs286696	0.89[EUR][1000 genomes]
rs7350035	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7779030	0.90[EUR][1000 genomes]
rs7798211	0.82[EUR][1000 genomes]
rs9639521	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016813	chr7:25405859-26150509	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
2	nsv538803	chr7:25405859-26150509	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:25813800-25817600	Enhancers	Skeletal Muscle Female	skeletal muscle
2	chr7:25815400-25817000	Enhancers	Colon Smooth Muscle	Colon
3	chr7:25815400-25819600	Enhancers	Psoas Muscle	Psoas
4	chr7:25815600-25818800	Enhancers	Fetal Muscle Leg	muscle
5	chr7:25815600-25819400	Enhancers	Skeletal Muscle Male	skeletal muscle
6	chr7:25815800-25817400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr7:25816000-25825600	Weak transcription	Aorta	Aorta
8	chr7:25816600-25817400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr7:25816600-25817800	Weak transcription	Fetal Muscle Trunk	muscle
10	chr7:25816800-25817800	Weak transcription	Fetal Stomach	stomach
11	chr7:25816800-25818200	Weak transcription	Adipose Nuclei	Adipose

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links