Variant report

Variant	rs286695
Chromosome Location	chr7:25831428-25831429
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10233419	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11770089	0.87[EUR][1000 genomes]
rs122505	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1376526	0.87[EUR][1000 genomes]
rs2214975	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs286688	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs286689	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs286690	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs286691	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs286694	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs286696	0.88[EUR][1000 genomes]
rs7350035	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7779030	0.88[EUR][1000 genomes]
rs7798211	0.81[EUR][1000 genomes]
rs9639521	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016813	chr7:25405859-26150509	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
2	nsv538803	chr7:25405859-26150509	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
3	nsv830928	chr7:25820147-25965014	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs286695	TOMM7	cis	parietal	SCAN
rs286695	TAX1BP1	cis	cerebellum	SCAN
rs286695	IL6	cis	cerebellum	SCAN
rs286695	KLHL7	cis	cerebellum	SCAN
rs286695	TRIL	cis	cerebellum	SCAN

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:25823000-25842800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr7:25827400-25835200	Weak transcription	NHLF	lung
3	chr7:25827600-25835200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr7:25827800-25834600	Weak transcription	Aorta	Aorta
5	chr7:25827800-25835600	Weak transcription	Adipose Nuclei	Adipose
6	chr7:25828600-25834800	Weak transcription	Rectal Smooth Muscle	rectum
7	chr7:25829800-25831600	Enhancers	Fetal Stomach	stomach
8	chr7:25829800-25831600	Enhancers	Stomach Smooth Muscle	stomach
9	chr7:25829800-25834600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr7:25830200-25834400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr7:25830200-25835400	Weak transcription	Fetal Lung	lung
12	chr7:25830200-25842600	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr7:25830400-25835400	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr7:25830600-25835200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr7:25830600-25835400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr7:25830600-25835400	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr7:25830600-25835600	Weak transcription	NHDF-Ad	bronchial
18	chr7:25830800-25835400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr7:25830800-25835400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr7:25831200-25834400	Weak transcription	Colon Smooth Muscle	Colon

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