Variant report

Variant	rs28670689
Chromosome Location	chr14:35502834-35502835
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:35500095..35502926-chr14:35557815..35560264,2	MCF-7	breast:
2	chr14:35500902..35503626-chr14:35810015..35811675,2	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10047872	1.00[AMR][1000 genomes]
rs10047873	1.00[AMR][1000 genomes]
rs10047962	1.00[AMR][1000 genomes]
rs10083515	1.00[AMR][1000 genomes]
rs10135327	1.00[AMR][1000 genomes]
rs10148770	1.00[AMR][1000 genomes]
rs10149228	1.00[AMR][1000 genomes]
rs10162341	1.00[AMR][1000 genomes]
rs10220564	1.00[AMR][1000 genomes]
rs11156869	1.00[AMR][1000 genomes]
rs11848097	1.00[AMR][1000 genomes]
rs12323745	1.00[AMR][1000 genomes]
rs28392933	1.00[AMR][1000 genomes]
rs28450834	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456203	chr14:35311272-35512335	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
2	nsv564200	chr14:35311272-35512335	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
3	nsv901602	chr14:35367889-35571651	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
4	nsv949617	chr14:35379923-35825436	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
5	nsv1043470	chr14:35398522-35754029	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
6	nsv542031	chr14:35398522-35754029	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
7	nsv901605	chr14:35409214-35512335	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
8	nsv901606	chr14:35449467-35512335	Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
9	nsv901607	chr14:35449467-35540764	Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
10	nsv901608	chr14:35449467-35571651	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
11	nsv901609	chr14:35449467-35587767	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
12	nsv456204	chr14:35466584-35556498	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
13	nsv564263	chr14:35466584-35556498	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
14	nsv901610	chr14:35470049-35509571	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
15	nsv901611	chr14:35470049-35540764	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
16	nsv901612	chr14:35470049-35571651	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
17	nsv901613	chr14:35470049-35587767	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
18	nsv1239	chr14:35477657-35522987	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
19	nsv564264	chr14:35482797-35732369	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
20	nsv901614	chr14:35485748-35571651	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
21	nsv901615	chr14:35485748-35630175	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
22	nsv870305	chr14:35488290-35852349	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
23	nsv1043801	chr14:35493065-35539399	Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:35454400-35509800	Weak transcription	Psoas Muscle	Psoas
2	chr14:35466000-35503800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr14:35467600-35503600	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr14:35474400-35503400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr14:35475800-35503200	Strong transcription	Adipose Nuclei	Adipose
6	chr14:35480000-35503200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr14:35480400-35504000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr14:35482800-35503200	Weak transcription	Stomach Mucosa	stomach
9	chr14:35485800-35503200	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr14:35485800-35514800	Weak transcription	Right Ventricle	heart
11	chr14:35488600-35514200	Weak transcription	Small Intestine	intestine
12	chr14:35489000-35507200	Weak transcription	Rectal Smooth Muscle	rectum
13	chr14:35490200-35514600	Weak transcription	NHLF	lung
14	chr14:35490600-35503200	Weak transcription	Colonic Mucosa	Colon
15	chr14:35491400-35503200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr14:35493000-35503400	Strong transcription	Primary neutrophils fromperipheralblood	blood
17	chr14:35493800-35503800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr14:35495400-35503000	Strong transcription	Skeletal Muscle Male	skeletal muscle
19	chr14:35495400-35503200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr14:35495600-35503200	Strong transcription	Thymus	Thymus
21	chr14:35495600-35503400	Strong transcription	Fetal Muscle Trunk	muscle
22	chr14:35495800-35503200	Weak transcription	Aorta	Aorta
23	chr14:35496800-35514600	Weak transcription	HSMMtube	muscle
24	chr14:35498000-35503400	Strong transcription	Fetal Stomach	stomach
25	chr14:35498000-35514200	Weak transcription	Fetal Kidney	kidney
26	chr14:35498200-35503400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr14:35498400-35505800	Weak transcription	HSMM	muscle
28	chr14:35498600-35503200	Weak transcription	Primary B cells from cord blood	blood
29	chr14:35498600-35514600	Weak transcription	Colon Smooth Muscle	Colon
30	chr14:35498800-35503200	Weak transcription	HMEC	breast
31	chr14:35499000-35503200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr14:35499000-35503200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr14:35499000-35503200	Weak transcription	HUVEC	blood vessel
34	chr14:35499000-35503400	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr14:35499000-35503400	Weak transcription	NHDF-Ad	bronchial
36	chr14:35499800-35503000	Strong transcription	Cortex derived primary cultured neurospheres	brain
37	chr14:35499800-35503400	Strong transcription	Primary T cells from cord blood	blood
38	chr14:35499800-35504000	Strong transcription	Placenta Amnion	Placenta Amnion
39	chr14:35500200-35504200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr14:35500400-35514200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
41	chr14:35500600-35503200	Weak transcription	Lung	lung
42	chr14:35500600-35503400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr14:35500600-35503600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr14:35501000-35504000	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr14:35501200-35503200	Weak transcription	Fetal Intestine Large	intestine
46	chr14:35501200-35503400	Weak transcription	Gastric	stomach
47	chr14:35501200-35503800	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr14:35501400-35503400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr14:35501600-35504000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr14:35501800-35503000	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived

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