Variant report

Variant	rs28671410
Chromosome Location	chr19:44740716-44740717
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:44739640..44742432-chr19:44813683..44816580,2	K562	blood:

rs_ID	r²[population]
rs10401758	1.00[EUR][1000 genomes]
rs10405091	0.89[EUR][1000 genomes]
rs10409423	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10409643	1.00[EUR][1000 genomes]
rs10410532	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10411499	0.89[EUR][1000 genomes]
rs10415196	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10416493	1.00[EUR][1000 genomes]
rs10418460	0.89[EUR][1000 genomes]
rs11881753	0.89[EUR][1000 genomes]
rs12104331	0.89[EUR][1000 genomes]
rs12104332	0.89[EUR][1000 genomes]
rs1584	0.89[EUR][1000 genomes]
rs16978910	0.89[EUR][1000 genomes]
rs16978912	0.89[EUR][1000 genomes]
rs16978921	0.89[EUR][1000 genomes]
rs2232803	0.89[EUR][1000 genomes]
rs28485815	0.89[EUR][1000 genomes]
rs57176078	0.89[EUR][1000 genomes]
rs57706678	0.89[EUR][1000 genomes]
rs58216091	0.89[EUR][1000 genomes]
rs7253796	0.89[EUR][1000 genomes]
rs7255445	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7257833	1.00[EUR][1000 genomes]
rs73553217	0.89[AFR][1000 genomes]
rs73567997	1.00[EUR][1000 genomes]
rs73934602	0.89[EUR][1000 genomes]
rs73937513	0.89[EUR][1000 genomes]
rs9749373	1.00[EUR][1000 genomes]

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44729800-44741000	ZNF genes & repeats	Lung	lung
2	chr19:44729800-44768600	ZNF genes & repeats	Adipose Nuclei	Adipose
3	chr19:44730000-44741200	ZNF genes & repeats	Ovary	ovary
4	chr19:44730000-44741400	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
5	chr19:44730000-44742000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
6	chr19:44730000-44743600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr19:44730000-44745000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr19:44730000-44775600	ZNF genes & repeats	Liver	Liver
9	chr19:44730200-44741200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr19:44730200-44741200	ZNF genes & repeats	Aorta	Aorta
11	chr19:44730200-44743000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
12	chr19:44730200-44743400	ZNF genes & repeats	Fetal Lung	lung
13	chr19:44730200-44754600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
14	chr19:44730400-44743400	Strong transcription	Cortex derived primary cultured neurospheres	brain
15	chr19:44730800-44741000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr19:44731000-44740800	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
17	chr19:44731000-44742000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr19:44731000-44744400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
19	chr19:44731200-44741400	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
20	chr19:44731400-44741400	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
21	chr19:44731400-44742000	ZNF genes & repeats	Fetal Intestine Small	intestine
22	chr19:44731600-44741000	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
23	chr19:44731600-44741000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr19:44731600-44741200	Strong transcription	Placenta Amnion	Placenta Amnion
25	chr19:44731600-44741200	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
26	chr19:44731800-44741000	ZNF genes & repeats	Primary mononuclear cells fromperipheralblood	Blood
27	chr19:44731800-44741000	ZNF genes & repeats	Small Intestine	intestine
28	chr19:44731800-44741200	Strong transcription	Placenta	Placenta
29	chr19:44731800-44741200	Strong transcription	Fetal Thymus	thymus
30	chr19:44731800-44741400	ZNF genes & repeats	Colon Smooth Muscle	Colon
31	chr19:44731800-44744200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
32	chr19:44732000-44741200	ZNF genes & repeats	Fetal Kidney	kidney
33	chr19:44732400-44741400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr19:44732600-44741400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr19:44733800-44740800	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
36	chr19:44733800-44741200	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
37	chr19:44733800-44744200	ZNF genes & repeats	A549	lung
38	chr19:44734000-44741000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr19:44734000-44741000	ZNF genes & repeats	Spleen	Spleen
40	chr19:44734200-44741200	ZNF genes & repeats	Primary T cells from cord blood	blood
41	chr19:44735200-44741400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
42	chr19:44735600-44741000	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
43	chr19:44735600-44741400	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
44	chr19:44735600-44742200	ZNF genes & repeats	Duodenum Mucosa	Duodenum
45	chr19:44735800-44740800	ZNF genes & repeats	Colonic Mucosa	Colon
46	chr19:44735800-44741400	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
47	chr19:44736000-44741200	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr19:44736000-44741200	ZNF genes & repeats	Stomach Smooth Muscle	stomach
49	chr19:44736200-44741000	Strong transcription	Fetal Heart	heart
50	chr19:44736200-44741000	Strong transcription	NHDF-Ad	bronchial

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