Variant report

Variant	rs10418460
Chromosome Location	chr19:44805436-44805437
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:44792368..44795343-chr19:44804228..44806715,3	K562	blood:
2	chr19:44803134..44806293-chr19:44806524..44808794,3	K562	blood:
3	chr19:44803407..44806293-chr19:44806642..44810099,5	K562	blood:
4	chr19:44803913..44805575-chr19:44807711..44810441,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000159917	Chromatin interaction
ENSG00000270679	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10401758	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs10405091	1.00[EUR][1000 genomes]
rs10406980	1.00[CEU][hapmap]
rs10409423	0.89[EUR][1000 genomes]
rs10409643	1.00[CEU][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes]
rs10409954	1.00[CEU][hapmap]
rs10410532	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs10411499	1.00[EUR][1000 genomes]
rs10415196	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs10415563	1.00[CEU][hapmap]
rs10416493	1.00[CEU][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes]
rs10422609	1.00[CEU][hapmap]
rs10424371	1.00[CEU][hapmap]
rs11881753	1.00[EUR][1000 genomes]
rs12104331	1.00[EUR][1000 genomes]
rs12104332	1.00[EUR][1000 genomes]
rs1584	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs16959114	1.00[CEU][hapmap]
rs16978910	1.00[ASW][hapmap];1.00[CEU][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16978912	1.00[EUR][1000 genomes]
rs16978921	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2232803	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs28485815	1.00[EUR][1000 genomes]
rs28671410	0.89[EUR][1000 genomes]
rs4803685	1.00[CEU][hapmap]
rs4803686	1.00[CEU][hapmap]
rs4803688	1.00[CEU][hapmap]
rs57176078	1.00[EUR][1000 genomes]
rs57706678	1.00[EUR][1000 genomes]
rs58216091	1.00[EUR][1000 genomes]
rs6509147	1.00[CEU][hapmap]
rs7250439	1.00[CEU][hapmap]
rs7253796	1.00[CEU][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7255445	0.89[EUR][1000 genomes]
rs7257833	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs73567997	0.89[EUR][1000 genomes]
rs73934602	1.00[EUR][1000 genomes]
rs73937513	1.00[EUR][1000 genomes]
rs8111388	1.00[CEU][hapmap]
rs922063	1.00[CEU][hapmap]
rs9749373	0.89[EUR][1000 genomes]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44777000-44807000	ZNF genes & repeats	Liver	Liver
2	chr19:44790400-44806800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr19:44790400-44808400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr19:44791200-44806800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
5	chr19:44792400-44807600	Weak transcription	HUVEC	blood vessel
6	chr19:44792800-44807600	Weak transcription	NH-A	brain
7	chr19:44792800-44808400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr19:44794400-44806400	Strong transcription	Rectal Mucosa Donor 29	rectum
9	chr19:44794400-44806800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr19:44794600-44807600	Strong transcription	Primary B cells from cord blood	blood
11	chr19:44796800-44806800	Strong transcription	Brain Germinal Matrix	brain
12	chr19:44798400-44807000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr19:44798400-44807400	Strong transcription	Dnd41	blood
14	chr19:44798600-44806800	Strong transcription	Cortex derived primary cultured neurospheres	brain
15	chr19:44799200-44805600	Strong transcription	Primary T cells fromperipheralblood	blood
16	chr19:44799200-44806800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr19:44799400-44806800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr19:44799400-44806800	Strong transcription	Fetal Kidney	kidney
19	chr19:44799600-44806800	Strong transcription	Placenta	Placenta
20	chr19:44799600-44806800	Strong transcription	Stomach Smooth Muscle	stomach
21	chr19:44799600-44807600	Strong transcription	Skeletal Muscle Female	skeletal muscle
22	chr19:44799800-44807400	Weak transcription	K562	blood
23	chr19:44799800-44807600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr19:44800000-44806800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr19:44800000-44806800	Strong transcription	Primary neutrophils fromperipheralblood	blood
26	chr19:44800000-44806800	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr19:44800200-44806000	Strong transcription	A549	lung
28	chr19:44800200-44806200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr19:44800200-44806200	Strong transcription	Brain Hippocampus Middle	brain
30	chr19:44800200-44806200	Strong transcription	Rectal Smooth Muscle	rectum
31	chr19:44800200-44806400	Strong transcription	Brain Cingulate Gyrus	brain
32	chr19:44800200-44806800	Strong transcription	HUES48 Cell Line	embryonic stem cell
33	chr19:44800200-44806800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
34	chr19:44800400-44806800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
35	chr19:44800400-44806800	Strong transcription	Brain Anterior Caudate	brain
36	chr19:44800800-44805800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
37	chr19:44800800-44806800	Strong transcription	Fetal Muscle Leg	muscle
38	chr19:44801000-44806200	Strong transcription	Fetal Muscle Trunk	muscle
39	chr19:44801000-44807600	Strong transcription	Skeletal Muscle Male	skeletal muscle
40	chr19:44801200-44806200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr19:44801200-44806200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr19:44801200-44806800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr19:44801200-44806800	Strong transcription	Fetal Thymus	thymus
44	chr19:44801200-44806800	Strong transcription	Thymus	Thymus
45	chr19:44801400-44805600	Strong transcription	Fetal Brain Female	brain
46	chr19:44801400-44806600	Strong transcription	Fetal Lung	lung
47	chr19:44801400-44807000	Strong transcription	Fetal Intestine Large	intestine
48	chr19:44801400-44807400	Weak transcription	NHLF	lung
49	chr19:44801400-44807600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr19:44801400-44807600	Weak transcription	HSMM	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links