Variant report

Variant	rs10406980
Chromosome Location	chr19:44731222-44731223
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs10153465	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10153499	0.83[ASN][1000 genomes]
rs10401758	1.00[CEU][hapmap]
rs10405281	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10408004	0.81[ASN][1000 genomes]
rs10409643	1.00[CEU][hapmap]
rs10409884	0.85[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs10409954	1.00[CEU][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10410283	0.86[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs10410532	1.00[CEU][hapmap]
rs10412910	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10415196	1.00[CEU][hapmap]
rs10415563	1.00[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10416230	0.86[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs10416292	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10416493	1.00[CEU][hapmap]
rs10417178	0.86[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs10418460	1.00[CEU][hapmap]
rs10420465	0.86[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs10422555	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10422609	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10424371	1.00[CEU][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10425146	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10425881	0.81[ASN][1000 genomes]
rs10426314	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1106562	0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs11140	1.00[CHD][hapmap];0.90[JPT][hapmap];0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11878679	0.81[ASN][1000 genomes]
rs11878720	0.81[ASN][1000 genomes]
rs11879588	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1584	1.00[CEU][hapmap]
rs16959114	1.00[CEU][hapmap];0.90[JPT][hapmap];0.95[EUR][1000 genomes]
rs16978665	1.00[CEU][hapmap];0.81[JPT][hapmap]
rs16978738	0.81[JPT][hapmap]
rs16978794	0.86[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs16978836	0.86[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs16978910	1.00[CEU][hapmap]
rs16978921	1.00[CEU][hapmap]
rs1881748	0.86[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2141524	0.86[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2178342	0.86[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2232803	1.00[CEU][hapmap]
rs28422007	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs3746322	0.81[JPT][hapmap]
rs3803932	0.86[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap]
rs3810137	0.86[CHB][hapmap];0.90[JPT][hapmap];0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4802212	0.86[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs4802213	0.81[ASN][1000 genomes]
rs4802215	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4803683	0.89[EUR][1000 genomes]
rs4803685	1.00[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4803686	1.00[CEU][hapmap];0.86[CHB][hapmap];0.83[CHD][hapmap];0.90[JPT][hapmap];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4803688	1.00[CEU][hapmap];0.86[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4803692	1.00[CHB][hapmap];0.90[JPT][hapmap];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4803693	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs55732275	0.81[ASN][1000 genomes]
rs57418162	0.81[ASN][1000 genomes]
rs57451052	0.81[ASN][1000 genomes]
rs58358390	0.81[ASN][1000 genomes]
rs59576456	0.81[ASN][1000 genomes]
rs59774711	0.83[ASN][1000 genomes]
rs60379253	0.81[ASN][1000 genomes]
rs60747128	0.81[ASN][1000 genomes]
rs6509142	0.81[JPT][hapmap]
rs6509144	0.89[EUR][1000 genomes]
rs6509147	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6509148	0.86[CHB][hapmap];0.81[ASN][1000 genomes]
rs7248797	0.81[ASN][1000 genomes]
rs7249992	0.86[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7250439	1.00[CEU][hapmap];0.81[JPT][hapmap]
rs7253796	1.00[CEU][hapmap]
rs7254034	0.81[ASN][1000 genomes]
rs7254458	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7257833	1.00[CEU][hapmap]
rs7259777	0.81[JPT][hapmap]
rs7260367	0.86[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7260588	0.81[JPT][hapmap]
rs73564059	0.81[ASN][1000 genomes]
rs73564095	0.81[ASN][1000 genomes]
rs8107252	0.86[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs8108504	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8108908	0.86[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs8111388	1.00[CEU][hapmap];0.90[JPT][hapmap];0.88[MEX][hapmap];0.95[EUR][1000 genomes]
rs8111562	0.81[JPT][hapmap]
rs922063	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];0.94[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs922064	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9304639	0.90[JPT][hapmap];0.81[ASN][1000 genomes]

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44717400-44739000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr19:44717600-44739600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr19:44717800-44731600	Weak transcription	HSMMtube	muscle
4	chr19:44717800-44732200	Weak transcription	Stomach Mucosa	stomach
5	chr19:44718200-44732400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr19:44718200-44732400	Weak transcription	K562	blood
7	chr19:44718200-44732600	Weak transcription	HepG2	liver
8	chr19:44718200-44732800	Weak transcription	HMEC	breast
9	chr19:44718200-44738800	Weak transcription	Hela-S3	cervix
10	chr19:44718400-44732400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr19:44718400-44736400	Weak transcription	HUVEC	blood vessel
12	chr19:44722000-44732000	Weak transcription	Colonic Mucosa	Colon
13	chr19:44722000-44732400	Weak transcription	Fetal Heart	heart
14	chr19:44722400-44731800	Weak transcription	Primary B cells from cord blood	blood
15	chr19:44722800-44732000	Weak transcription	Brain Cingulate Gyrus	brain
16	chr19:44723200-44732400	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr19:44723400-44731600	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr19:44723400-44731800	Weak transcription	Left Ventricle	heart
19	chr19:44723400-44731800	Weak transcription	Right Ventricle	heart
20	chr19:44723600-44731400	Weak transcription	Primary B cells from peripheral blood	blood
21	chr19:44723600-44731600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr19:44723600-44731800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr19:44723600-44731800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
24	chr19:44723600-44731800	Weak transcription	Brain Anterior Caudate	brain
25	chr19:44723600-44731800	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr19:44723600-44731800	Weak transcription	Fetal Brain Male	brain
27	chr19:44723600-44731800	Weak transcription	Fetal Thymus	thymus
28	chr19:44723600-44732000	Weak transcription	Brain Hippocampus Middle	brain
29	chr19:44723600-44732400	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr19:44723600-44732600	Weak transcription	Brain Angular Gyrus	brain
31	chr19:44723600-44732600	Weak transcription	NHLF	lung
32	chr19:44723600-44738000	Weak transcription	NHEK	skin
33	chr19:44723800-44731800	Weak transcription	Placenta	Placenta
34	chr19:44723800-44732400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr19:44723800-44732400	Weak transcription	HSMM	muscle
36	chr19:44723800-44732600	Weak transcription	Osteobl	bone
37	chr19:44723800-44735800	Weak transcription	NH-A	brain
38	chr19:44725000-44731400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr19:44725600-44731600	Weak transcription	Primary T cells fromperipheralblood	blood
40	chr19:44729800-44733600	ZNF genes & repeats	Brain Germinal Matrix	brain
41	chr19:44729800-44734800	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr19:44729800-44735000	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
43	chr19:44729800-44735800	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
44	chr19:44729800-44741000	ZNF genes & repeats	Lung	lung
45	chr19:44729800-44768600	ZNF genes & repeats	Adipose Nuclei	Adipose
46	chr19:44730000-44731400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
47	chr19:44730000-44731600	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
48	chr19:44730000-44732800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr19:44730000-44733000	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
50	chr19:44730000-44733200	ZNF genes & repeats	Duodenum Mucosa	Duodenum

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