Variant report

Variant	rs10153499
Chromosome Location	chr6:27621439-27621440
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:27620343..27622323-chr6:27775251..27777000,2	K562	blood:
2	chr6:27619629..27622323-chr6:27775500..27777172,2	K562	blood:

Variant related genes	Relation type
ENSG00000196747	Chromatin interaction
ENSG00000185130	Chromatin interaction

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10153465	0.95[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10405281	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10406980	0.83[ASN][1000 genomes]
rs10408004	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10409884	0.91[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10409954	0.92[ASN][1000 genomes]
rs10410283	0.90[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10412910	0.93[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10415563	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10415664	0.82[ASN][1000 genomes]
rs10416230	0.90[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10416292	0.95[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10417178	0.90[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10420465	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10422555	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10422609	0.94[ASN][1000 genomes]
rs10424371	0.94[ASN][1000 genomes]
rs10425146	0.95[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10425881	0.90[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10426314	0.93[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1106562	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11140	0.93[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11878679	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11878720	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11879588	0.95[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11879843	0.92[ASN][1000 genomes]
rs16959114	0.84[ASN][1000 genomes]
rs16978738	0.84[ASN][1000 genomes]
rs16978794	0.94[ASN][1000 genomes]
rs16978836	0.95[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1881748	0.94[ASN][1000 genomes]
rs2141524	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2141525	0.91[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2178342	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs28422007	0.95[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs3803932	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs3810137	0.93[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4802212	0.90[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4802213	0.91[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4802215	0.93[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4803683	0.84[ASN][1000 genomes]
rs4803685	0.86[ASN][1000 genomes]
rs4803686	0.86[ASN][1000 genomes]
rs4803688	0.94[ASN][1000 genomes]
rs4803692	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4803693	0.93[AMR][1000 genomes]
rs55732275	0.90[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs57418162	0.90[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs57451052	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs58358390	0.90[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs59576456	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs59774711	0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs60379253	0.90[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs60747128	0.90[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6509144	0.84[ASN][1000 genomes]
rs6509147	0.94[ASN][1000 genomes]
rs6509148	0.91[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7248797	0.91[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7249992	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7254034	0.94[ASN][1000 genomes]
rs7254458	0.93[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7260367	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs73564059	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs73564095	0.90[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs8107252	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs8108504	0.94[ASN][1000 genomes]
rs8108908	0.90[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs8111388	0.84[ASN][1000 genomes]
rs922063	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs922064	0.93[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9304639	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022797	chr6:27396961-27864277	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	390 gene(s)	inside rSNPs	diseases
2	nsv883510	chr6:27550712-27730064	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
3	nsv1023673	chr6:27570731-27688782	Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
4	nsv830618	chr6:27593274-27789605	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	143 gene(s)	inside rSNPs	diseases
5	nsv1031337	chr6:27596676-27734884	Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27619600-27621600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:27621000-27622600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr6:27621400-27621600	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links