Variant report

Variant	rs922063
Chromosome Location	chr19:44732658-44732659
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:44731816..44734081-chr19:44735997..44738097,2	K562	blood:

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:88)

rs_ID	r²[population]
rs10153465	0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10153499	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10401758	1.00[CEU][hapmap]
rs10405281	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10406980	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];0.94[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10408004	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10409643	1.00[CEU][hapmap]
rs10409884	0.85[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10409954	1.00[CEU][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10410283	0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10410532	1.00[CEU][hapmap]
rs10412910	0.92[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10415196	1.00[CEU][hapmap]
rs10415563	1.00[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10416230	0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10416292	0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10416493	1.00[CEU][hapmap]
rs10417178	0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10418460	1.00[CEU][hapmap]
rs10420465	0.86[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10422555	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10422609	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10424371	1.00[CEU][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10425146	0.90[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10425881	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10426314	0.92[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1106562	0.86[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11140	1.00[CHD][hapmap];0.90[JPT][hapmap];0.81[MEX][hapmap];0.92[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11878679	0.81[ASN][1000 genomes]
rs11878720	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11879588	0.90[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1584	1.00[CEU][hapmap]
rs16959114	1.00[CEU][hapmap];0.90[JPT][hapmap];0.95[EUR][1000 genomes]
rs16978665	1.00[CEU][hapmap];0.81[JPT][hapmap]
rs16978738	0.81[JPT][hapmap]
rs16978794	0.86[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs16978836	0.86[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs16978910	1.00[CEU][hapmap]
rs16978921	1.00[CEU][hapmap]
rs1881748	0.86[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2141524	0.86[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2141525	0.84[AMR][1000 genomes]
rs2178342	0.86[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2232803	1.00[CEU][hapmap]
rs28422007	0.90[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs3746322	0.81[JPT][hapmap]
rs3803932	0.86[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes]
rs3810137	0.86[CHB][hapmap];0.90[JPT][hapmap];0.92[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4802212	0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4802213	0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4802215	0.92[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4803683	0.89[EUR][1000 genomes]
rs4803685	1.00[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4803686	1.00[CEU][hapmap];0.86[CHB][hapmap];0.83[CHD][hapmap];0.90[JPT][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4803688	1.00[CEU][hapmap];0.86[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4803692	1.00[CHB][hapmap];0.90[JPT][hapmap];0.96[ASN][1000 genomes]
rs4803693	0.92[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs55732275	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs57418162	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs57451052	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs58358390	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs59576456	0.81[ASN][1000 genomes]
rs59774711	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs60379253	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs60747128	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6509142	0.81[JPT][hapmap]
rs6509144	0.89[EUR][1000 genomes]
rs6509147	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6509148	0.86[CHB][hapmap];0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7248797	0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7249992	0.86[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7250439	1.00[CEU][hapmap];0.81[JPT][hapmap]
rs7253796	1.00[CEU][hapmap]
rs7254034	0.81[ASN][1000 genomes]
rs7254458	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7257833	1.00[CEU][hapmap]
rs7259777	0.81[JPT][hapmap]
rs7260367	0.86[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7260588	0.81[JPT][hapmap]
rs73564059	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs73564095	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs8107252	0.86[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs8108504	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8108908	0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs8111388	1.00[CEU][hapmap];0.90[JPT][hapmap];0.94[MEX][hapmap];0.95[EUR][1000 genomes]
rs8111562	0.81[JPT][hapmap]
rs922064	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9304639	0.90[JPT][hapmap];0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44717400-44739000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr19:44717600-44739600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr19:44718200-44732800	Weak transcription	HMEC	breast
4	chr19:44718200-44738800	Weak transcription	Hela-S3	cervix
5	chr19:44718400-44736400	Weak transcription	HUVEC	blood vessel
6	chr19:44723600-44738000	Weak transcription	NHEK	skin
7	chr19:44723800-44735800	Weak transcription	NH-A	brain
8	chr19:44729800-44733600	ZNF genes & repeats	Brain Germinal Matrix	brain
9	chr19:44729800-44734800	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr19:44729800-44735000	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
11	chr19:44729800-44735800	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
12	chr19:44729800-44741000	ZNF genes & repeats	Lung	lung
13	chr19:44729800-44768600	ZNF genes & repeats	Adipose Nuclei	Adipose
14	chr19:44730000-44732800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr19:44730000-44733000	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
16	chr19:44730000-44733200	ZNF genes & repeats	Duodenum Mucosa	Duodenum
17	chr19:44730000-44735000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr19:44730000-44737000	ZNF genes & repeats	Fetal Muscle Leg	muscle
19	chr19:44730000-44741200	ZNF genes & repeats	Ovary	ovary
20	chr19:44730000-44741400	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
21	chr19:44730000-44742000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
22	chr19:44730000-44743600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr19:44730000-44745000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr19:44730000-44775600	ZNF genes & repeats	Liver	Liver
25	chr19:44730200-44733200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
26	chr19:44730200-44733200	ZNF genes & repeats	Fetal Muscle Trunk	muscle
27	chr19:44730200-44733400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr19:44730200-44736400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr19:44730200-44736400	ZNF genes & repeats	Fetal Brain Female	brain
30	chr19:44730200-44739600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr19:44730200-44741200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr19:44730200-44741200	ZNF genes & repeats	Aorta	Aorta
33	chr19:44730200-44743000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
34	chr19:44730200-44743400	ZNF genes & repeats	Fetal Lung	lung
35	chr19:44730200-44754600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
36	chr19:44730400-44734400	Strong transcription	Skeletal Muscle Female	skeletal muscle
37	chr19:44730400-44735200	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
38	chr19:44730400-44743400	Strong transcription	Cortex derived primary cultured neurospheres	brain
39	chr19:44730800-44739800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr19:44730800-44741000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr19:44731000-44733200	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr19:44731000-44734000	Strong transcription	NHDF-Ad	bronchial
43	chr19:44731000-44734400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr19:44731000-44734800	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
45	chr19:44731000-44739400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr19:44731000-44740800	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
47	chr19:44731000-44742000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr19:44731000-44744400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
49	chr19:44731200-44733400	ZNF genes & repeats	GM12878-XiMat	blood
50	chr19:44731200-44739800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell

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