Variant report

Variant	rs10153465
Chromosome Location	chr19:44710667-44710668
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:44596073..44597984-chr19:44710588..44712283,2	K562	blood:
2	chr19:44668036..44670553-chr19:44709491..44711796,2	MCF-7	breast:
3	chr19:44709921..44713618-chr19:44714834..44717350,4	K562	blood:

Variant related genes	Relation type
ENSG00000265842	Chromatin interaction
ENSG00000131115	Chromatin interaction
ENSG00000167380	Chromatin interaction

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10153499	0.95[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10405281	0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10406980	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10408004	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10409884	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10409954	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10410283	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10412910	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10415563	0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10415664	0.84[ASN][1000 genomes]
rs10416230	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10416292	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10417178	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10420465	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10422555	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10422609	0.96[ASN][1000 genomes]
rs10424371	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10425146	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10425881	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10426314	0.98[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1106562	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11140	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11878679	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11878720	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11879588	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11879843	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs16959114	0.86[ASN][1000 genomes]
rs16978738	0.86[ASN][1000 genomes]
rs16978794	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16978836	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1881748	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2141524	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2141525	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2178342	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28422007	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3803932	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3810137	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4802212	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4802213	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4802215	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4803683	0.83[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs4803685	0.86[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs4803686	0.88[AFR][1000 genomes];0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4803688	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4803692	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4803693	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55732275	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57418162	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57451052	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58358390	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59576456	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59774711	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60379253	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60747128	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6509144	0.81[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs6509147	0.96[ASN][1000 genomes]
rs6509148	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7248797	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7249992	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7254034	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7254458	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7260367	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73564059	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73564095	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8107252	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8108504	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs8108908	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8111388	0.86[ASN][1000 genomes]
rs922063	0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs922064	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9304639	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833840	chr19:44520620-44715760	Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44682200-44711200	Weak transcription	Brain Cingulate Gyrus	brain
2	chr19:44698800-44711200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr19:44705200-44711200	Weak transcription	Right Atrium	heart
4	chr19:44707200-44711200	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr19:44707200-44711200	Weak transcription	Hela-S3	cervix
6	chr19:44709200-44711600	ZNF genes & repeats	Liver	Liver
7	chr19:44710400-44710800	ZNF genes & repeats	Thymus	Thymus
8	chr19:44710400-44713400	Active TSS	Duodenum Smooth Muscle	Duodenum
9	chr19:44710600-44711000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
10	chr19:44710600-44711200	ZNF genes & repeats	Dnd41	blood
11	chr19:44710600-44711800	Active TSS	Rectal Smooth Muscle	rectum
12	chr19:44710600-44711800	Active TSS	Skeletal Muscle Female	skeletal muscle

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