Variant report

Variant	rs11140
Chromosome Location	chr19:44741235-44741236
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:44739640..44742432-chr19:44813683..44816580,2	K562	blood:

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10153465	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10153499	0.93[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10405281	0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10406980	1.00[CHD][hapmap];0.90[JPT][hapmap];0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10408004	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10409884	1.00[ASW][hapmap];0.82[CHD][hapmap];0.90[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10409954	0.81[AMR][1000 genomes]
rs10410283	0.90[JPT][hapmap];0.93[YRI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10412910	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10415563	0.82[JPT][hapmap];0.86[AMR][1000 genomes]
rs10416230	0.90[JPT][hapmap];0.83[YRI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10416292	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10417178	0.90[JPT][hapmap];0.93[YRI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10420465	0.90[JPT][hapmap];0.83[YRI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10422555	0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs10422609	0.90[JPT][hapmap];0.80[ASN][1000 genomes]
rs10424371	0.80[ASN][1000 genomes]
rs10425146	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10425881	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10426314	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1106562	0.90[JPT][hapmap];0.83[YRI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11878679	0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs11878720	0.88[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs11879588	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16978794	0.90[JPT][hapmap];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs16978836	0.90[JPT][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1881748	0.88[CHD][hapmap];0.90[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2141524	0.90[JPT][hapmap];0.83[YRI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2141525	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2178342	0.90[JPT][hapmap];0.83[YRI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28422007	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3803932	1.00[ASW][hapmap];0.88[CHD][hapmap];0.90[JPT][hapmap];0.91[LWK][hapmap];0.93[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3810137	0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4802212	0.90[JPT][hapmap];0.83[YRI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4802213	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4802215	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4803685	0.85[YRI][hapmap];0.80[ASN][1000 genomes]
rs4803686	1.00[ASW][hapmap];0.83[CHD][hapmap];0.93[LWK][hapmap];0.98[MKK][hapmap];0.93[YRI][hapmap];0.80[ASN][1000 genomes]
rs4803688	0.88[CHD][hapmap];0.90[JPT][hapmap];0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs4803692	1.00[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4803693	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55732275	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs57418162	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs57451052	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs58358390	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs59576456	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs59774711	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60379253	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs60747128	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6509147	0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs6509148	0.87[ASW][hapmap];0.95[LWK][hapmap];0.93[MEX][hapmap];0.86[YRI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7248797	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7249992	0.90[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7254034	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7254458	0.90[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7260367	1.00[ASW][hapmap];0.88[CHD][hapmap];0.90[JPT][hapmap];0.95[LWK][hapmap];0.93[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73564059	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73564095	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs8107252	0.90[JPT][hapmap];0.83[YRI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs8108504	0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs8108908	0.90[JPT][hapmap];0.93[YRI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs922063	1.00[CHD][hapmap];0.90[JPT][hapmap];0.81[MEX][hapmap];0.92[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs922064	1.00[ASW][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9304639	0.89[YRI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44729800-44768600	ZNF genes & repeats	Adipose Nuclei	Adipose
2	chr19:44730000-44741400	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
3	chr19:44730000-44742000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
4	chr19:44730000-44743600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr19:44730000-44745000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr19:44730000-44775600	ZNF genes & repeats	Liver	Liver
7	chr19:44730200-44743000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
8	chr19:44730200-44743400	ZNF genes & repeats	Fetal Lung	lung
9	chr19:44730200-44754600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
10	chr19:44730400-44743400	Strong transcription	Cortex derived primary cultured neurospheres	brain
11	chr19:44731000-44742000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr19:44731000-44744400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
13	chr19:44731200-44741400	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
14	chr19:44731400-44741400	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
15	chr19:44731400-44742000	ZNF genes & repeats	Fetal Intestine Small	intestine
16	chr19:44731800-44741400	ZNF genes & repeats	Colon Smooth Muscle	Colon
17	chr19:44731800-44744200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
18	chr19:44732400-44741400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr19:44732600-44741400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr19:44733800-44744200	ZNF genes & repeats	A549	lung
21	chr19:44735200-44741400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
22	chr19:44735600-44741400	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
23	chr19:44735600-44742200	ZNF genes & repeats	Duodenum Mucosa	Duodenum
24	chr19:44735800-44741400	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
25	chr19:44736200-44741400	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
26	chr19:44736200-44741400	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
27	chr19:44737000-44741800	ZNF genes & repeats	Fetal Stomach	stomach
28	chr19:44737400-44741400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr19:44737600-44744400	ZNF genes & repeats	Fetal Brain Female	brain
30	chr19:44738000-44741400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
31	chr19:44738000-44741400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr19:44738000-44741400	ZNF genes & repeats	Primary B cells from peripheral blood	blood
33	chr19:44738000-44741400	ZNF genes & repeats	Brain Germinal Matrix	brain
34	chr19:44738000-44742000	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr19:44738000-44742600	ZNF genes & repeats	Brain Hippocampus Middle	brain
36	chr19:44738000-44742600	ZNF genes & repeats	Psoas Muscle	Psoas
37	chr19:44738600-44741400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
38	chr19:44738800-44741400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr19:44739200-44741400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr19:44739800-44741400	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
41	chr19:44740000-44741800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr19:44740000-44746400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
43	chr19:44740200-44741800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr19:44740200-44742000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr19:44740200-44750800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr19:44740200-44752200	Weak transcription	Hela-S3	cervix
47	chr19:44741000-44741400	Strong transcription	HSMM	muscle
48	chr19:44741000-44741600	Weak transcription	Right Ventricle	heart
49	chr19:44741000-44742000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr19:44741000-44742400	Weak transcription	Pancreas	Pancrea

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