Variant report

Variant	rs73564059
Chromosome Location	chr19:44662443-44662444
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:44658613..44663687-chr19:44664925..44670649,9	K562	blood:
2	chr19:44646506..44648023-chr19:44661146..44663023,2	K562	blood:
3	chr19:44656935..44659293-chr19:44661242..44662914,2	K562	blood:
4	chr19:44660989..44662791-chr19:44667723..44670478,2	MCF-7	breast:
5	chr19:44661681..44663687-chr19:44667257..44669525,2	K562	blood:

Variant related genes	Relation type
ENSG00000167380	Chromatin interaction

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10153465	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10153499	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10405281	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10406980	0.81[ASN][1000 genomes]
rs10408004	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10409884	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10409954	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10410283	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10412910	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10415563	0.92[ASN][1000 genomes]
rs10415664	0.88[ASN][1000 genomes]
rs10416230	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10416292	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10417178	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10420465	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10422555	0.96[ASN][1000 genomes]
rs10422609	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10424371	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10425146	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10425881	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10426314	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1106562	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11140	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11878679	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11878720	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11879588	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11879843	0.90[ASN][1000 genomes]
rs13346417	0.82[ASN][1000 genomes]
rs16959114	0.90[ASN][1000 genomes]
rs16978738	0.90[ASN][1000 genomes]
rs16978794	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16978836	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1881748	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2141524	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2141525	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2178342	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28422007	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3746322	0.82[ASN][1000 genomes]
rs3803932	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3810137	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4802212	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4802213	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4802215	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4803683	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4803685	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4803686	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4803688	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4803692	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4803693	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55732275	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57418162	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57451052	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58358390	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59576456	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59774711	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60379253	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60747128	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6509144	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6509147	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6509148	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7248797	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7249992	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7254034	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7254458	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7259777	0.82[ASN][1000 genomes]
rs7260367	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7260588	0.82[ASN][1000 genomes]
rs73564095	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8107252	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8108504	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8108908	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8111388	0.90[ASN][1000 genomes]
rs922063	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs922064	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9304639	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833840	chr19:44520620-44715760	Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44647800-44668400	ZNF genes & repeats	Liver	Liver
2	chr19:44648400-44663200	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
3	chr19:44652200-44662800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr19:44652400-44667600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
5	chr19:44653800-44668200	ZNF genes & repeats	Adipose Nuclei	Adipose
6	chr19:44656200-44662600	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
7	chr19:44656400-44662600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
8	chr19:44657600-44663600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr19:44657800-44663200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
10	chr19:44657800-44663200	ZNF genes & repeats	Primary B cells from cord blood	blood
11	chr19:44658000-44662600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
12	chr19:44658200-44662600	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
13	chr19:44658200-44662800	ZNF genes & repeats	Aorta	Aorta
14	chr19:44659000-44662600	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr19:44660000-44663200	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr19:44660200-44662600	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr19:44660200-44662600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr19:44660200-44662600	ZNF genes & repeats	Left Ventricle	heart
19	chr19:44660200-44662600	ZNF genes & repeats	Lung	lung
20	chr19:44660200-44662800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr19:44660200-44663200	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr19:44660200-44663200	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr19:44660200-44663400	ZNF genes & repeats	Osteobl	bone
24	chr19:44661400-44668600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr19:44661600-44662800	ZNF genes & repeats	Fetal Stomach	stomach
26	chr19:44661600-44668200	Weak transcription	HepG2	liver
27	chr19:44661800-44663200	Strong transcription	Fetal Brain Male	brain
28	chr19:44662000-44663400	Strong transcription	Brain Germinal Matrix	brain
29	chr19:44662000-44665200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr19:44662200-44663200	Weak transcription	Fetal Thymus	thymus
31	chr19:44662200-44663200	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr19:44662200-44664200	Weak transcription	HSMMtube	muscle
33	chr19:44662200-44668400	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr19:44662200-44668400	Weak transcription	Brain Cingulate Gyrus	brain
35	chr19:44662200-44668400	Weak transcription	Fetal Heart	heart
36	chr19:44662200-44668600	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr19:44662200-44668600	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr19:44662200-44668600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr19:44662200-44668600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr19:44662200-44668600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr19:44662200-44668600	Weak transcription	Fetal Brain Female	brain
42	chr19:44662200-44668600	Weak transcription	Right Ventricle	heart
43	chr19:44662200-44668600	Weak transcription	NHDF-Ad	bronchial
44	chr19:44662200-44668800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr19:44662400-44668400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr19:44662400-44668400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr19:44662400-44668600	Weak transcription	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links