Variant report

Variant	rs10426314
Chromosome Location	chr19:44730496-44730497
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA2	chr19:44730447-44730843	A549	lung:	n/a	n/a
2	FOXA2	chr19:44730439-44730826	A549	lung:	n/a	n/a

Variant related genes	Relation type
ZNF227	TF binding region

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10153465	0.98[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10153499	0.93[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10405281	0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10406980	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10408004	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10409884	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10409954	0.81[AMR][1000 genomes]
rs10410283	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10412910	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10415563	0.86[AMR][1000 genomes]
rs10416230	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10416292	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10417178	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10420465	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10422555	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10425146	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10425881	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1106562	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11140	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11878679	0.86[AMR][1000 genomes]
rs11878720	0.88[AMR][1000 genomes]
rs11879588	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16978836	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1881748	0.83[EUR][1000 genomes]
rs2141524	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2141525	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2178342	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs28422007	0.98[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3803932	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3810137	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4802212	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4802213	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4802215	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4803688	0.81[AMR][1000 genomes]
rs4803692	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4803693	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs55732275	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs57418162	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs57451052	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs58358390	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs59576456	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs59774711	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs60379253	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs60747128	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6509148	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7248797	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7249992	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7254458	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7260367	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73564059	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73564095	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs8107252	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs8108504	0.83[AMR][1000 genomes]
rs8108908	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs922063	0.92[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs922064	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9304639	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44717400-44739000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr19:44717600-44739600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr19:44717800-44731600	Weak transcription	HSMMtube	muscle
4	chr19:44717800-44732200	Weak transcription	Stomach Mucosa	stomach
5	chr19:44718200-44732400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr19:44718200-44732400	Weak transcription	K562	blood
7	chr19:44718200-44732600	Weak transcription	HepG2	liver
8	chr19:44718200-44732800	Weak transcription	HMEC	breast
9	chr19:44718200-44738800	Weak transcription	Hela-S3	cervix
10	chr19:44718400-44732400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr19:44718400-44736400	Weak transcription	HUVEC	blood vessel
12	chr19:44722000-44730800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr19:44722000-44732000	Weak transcription	Colonic Mucosa	Colon
14	chr19:44722000-44732400	Weak transcription	Fetal Heart	heart
15	chr19:44722200-44731000	Weak transcription	NHDF-Ad	bronchial
16	chr19:44722400-44731800	Weak transcription	Primary B cells from cord blood	blood
17	chr19:44722800-44732000	Weak transcription	Brain Cingulate Gyrus	brain
18	chr19:44723200-44731200	Weak transcription	Fetal Kidney	kidney
19	chr19:44723200-44732400	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr19:44723400-44731600	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr19:44723400-44731800	Weak transcription	Left Ventricle	heart
22	chr19:44723400-44731800	Weak transcription	Right Ventricle	heart
23	chr19:44723600-44731000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr19:44723600-44731000	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr19:44723600-44731000	Weak transcription	A549	lung
26	chr19:44723600-44731200	Weak transcription	Primary T cells from cord blood	blood
27	chr19:44723600-44731400	Weak transcription	Primary B cells from peripheral blood	blood
28	chr19:44723600-44731600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr19:44723600-44731800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr19:44723600-44731800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr19:44723600-44731800	Weak transcription	Brain Anterior Caudate	brain
32	chr19:44723600-44731800	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr19:44723600-44731800	Weak transcription	Fetal Brain Male	brain
34	chr19:44723600-44731800	Weak transcription	Fetal Thymus	thymus
35	chr19:44723600-44732000	Weak transcription	Brain Hippocampus Middle	brain
36	chr19:44723600-44732400	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr19:44723600-44732600	Weak transcription	Brain Angular Gyrus	brain
38	chr19:44723600-44732600	Weak transcription	NHLF	lung
39	chr19:44723600-44738000	Weak transcription	NHEK	skin
40	chr19:44723800-44731000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr19:44723800-44731000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr19:44723800-44731200	Weak transcription	Primary T helper cells fromperipheralblood	blood
43	chr19:44723800-44731800	Weak transcription	Placenta	Placenta
44	chr19:44723800-44732400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr19:44723800-44732400	Weak transcription	HSMM	muscle
46	chr19:44723800-44732600	Weak transcription	Osteobl	bone
47	chr19:44723800-44735800	Weak transcription	NH-A	brain
48	chr19:44725000-44731400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr19:44725200-44731000	Weak transcription	Dnd41	blood
50	chr19:44725600-44731000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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