Variant report

Variant	rs28673057
Chromosome Location	chr5:145230891-145230892
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:145224836..145227522-chr5:145230505..145232627,3	K562	blood:
2	chr5:145213285..145215718-chr5:145228985..145231210,2	K562	blood:
3	chr5:145213109..145215040-chr5:145230719..145232412,2	MCF-7	breast:
4	chr5:145230827..145232577-chr5:145232583..145235834,3	K562	blood:

Variant related genes	Relation type
ENSG00000186314	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1001433	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10043321	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10045188	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10050400	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10055545	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10058783	0.91[AFR][1000 genomes]
rs10071145	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10477291	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1565437	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28451090	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3995495	0.81[AFR][1000 genomes]
rs56410343	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59511054	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60544283	0.87[EUR][1000 genomes]
rs60708187	0.87[EUR][1000 genomes]
rs6890408	0.87[ASN][1000 genomes]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:145225400-145234400	Weak transcription	Gastric	stomach
2	chr5:145225600-145232600	Weak transcription	Aorta	Aorta
3	chr5:145227000-145235400	Weak transcription	Fetal Heart	heart
4	chr5:145227400-145231400	Weak transcription	Stomach Mucosa	stomach
5	chr5:145228000-145231000	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr5:145228600-145234200	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr5:145228600-145234200	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr5:145228600-145234200	Weak transcription	HSMM	muscle
9	chr5:145228800-145234000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr5:145228800-145234000	Weak transcription	NH-A	brain
11	chr5:145228800-145234000	Weak transcription	Osteobl	bone
12	chr5:145228800-145234200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr5:145229000-145231400	Weak transcription	K562	blood
14	chr5:145229000-145234000	Weak transcription	Hela-S3	cervix
15	chr5:145229000-145234000	Weak transcription	HMEC	breast
16	chr5:145229000-145234000	Weak transcription	HUVEC	blood vessel
17	chr5:145229000-145234000	Weak transcription	NHDF-Ad	bronchial
18	chr5:145229000-145234200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr5:145229000-145234200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr5:145229200-145234000	Weak transcription	NHEK	skin
21	chr5:145229200-145234200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr5:145229200-145234200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr5:145230200-145232600	Weak transcription	Small Intestine	intestine

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