Variant report

Variant	rs3995495
Chromosome Location	chr5:145235669-145235670
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:145212960..145219188-chr5:145232213..145235932,5	K562	blood:
2	chr5:145233530..145236507-chr5:145244949..145247548,2	K562	blood:
3	chr5:145200389..145203270-chr5:145232489..145236140,3	K562	blood:
4	chr5:145213641..145216499-chr5:145233282..145236150,2	MCF-7	breast:
5	chr5:145230827..145232577-chr5:145232583..145235834,3	K562	blood:
6	chr5:145228302..145230398-chr5:145235405..145237342,3	K562	blood:

Variant related genes	Relation type
ENSG00000186314	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1001433	0.82[AFR][1000 genomes]
rs10050400	1.00[GIH][hapmap];1.00[TSI][hapmap]
rs10055406	0.81[JPT][hapmap]
rs10058783	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10062926	0.83[ASN][1000 genomes]
rs10071145	1.00[GIH][hapmap];1.00[TSI][hapmap]
rs10079977	0.81[JPT][hapmap]
rs10477291	1.00[GIH][hapmap];0.92[LWK][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.82[AFR][1000 genomes]
rs13359571	0.81[JPT][hapmap]
rs28451090	0.84[AFR][1000 genomes]
rs28673057	0.81[AFR][1000 genomes]
rs3957706	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3995495	PRELID2	cis	lymphoblastoid	seeQTL

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:145231000-145235800	Enhancers	Fetal Intestine Large	intestine
2	chr5:145231400-145236000	Enhancers	Fetal Intestine Small	intestine
3	chr5:145232800-145235800	Weak transcription	Pancreas	Pancrea
4	chr5:145233200-145235800	Weak transcription	Colonic Mucosa	Colon
5	chr5:145233800-145236400	Enhancers	Stomach Mucosa	stomach
6	chr5:145234000-145235800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr5:145234000-145235800	Enhancers	HUVEC	blood vessel
8	chr5:145234000-145235800	Enhancers	NH-A	brain
9	chr5:145234000-145235800	Enhancers	NHDF-Ad	bronchial
10	chr5:145234000-145236000	Enhancers	HMEC	breast
11	chr5:145234000-145236400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr5:145234000-145236400	Enhancers	Small Intestine	intestine
13	chr5:145234200-145235800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr5:145234200-145235800	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr5:145234200-145235800	Enhancers	Muscle Satellite Cultured Cells	--
16	chr5:145234200-145235800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr5:145234200-145235800	Enhancers	NHLF	lung
18	chr5:145234200-145236200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr5:145234400-145236000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr5:145234400-145236400	Enhancers	Gastric	stomach
21	chr5:145234600-145235800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr5:145234600-145235800	Enhancers	Duodenum Mucosa	Duodenum
23	chr5:145234600-145236000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr5:145234800-145235800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
25	chr5:145234800-145235800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr5:145234800-145235800	Weak transcription	Esophagus	oesophagus
27	chr5:145234800-145235800	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr5:145234800-145235800	Weak transcription	Right Atrium	heart
29	chr5:145235000-145236400	Enhancers	K562	blood
30	chr5:145235200-145235800	Flanking Active TSS	HepG2	liver
31	chr5:145235400-145235800	Enhancers	Fetal Lung	lung
32	chr5:145235400-145235800	Flanking Active TSS	Stomach Smooth Muscle	stomach
33	chr5:145235400-145236000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
34	chr5:145235400-145236000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
35	chr5:145235400-145236000	Flanking Active TSS	Brain Substantia Nigra	brain
36	chr5:145235400-145236000	Flanking Active TSS	Colon Smooth Muscle	Colon
37	chr5:145235400-145236200	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
38	chr5:145235400-145236200	Active TSS	Skeletal Muscle Male	skeletal muscle
39	chr5:145235400-145236400	Active TSS	iPS-15b Cell Line	embryonic stem cell
40	chr5:145235400-145236400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr5:145235400-145236400	Enhancers	Fetal Brain Male	brain
42	chr5:145235400-145236800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr5:145235600-145235800	Flanking Active TSS	H9 Cell Line	embryonic stem cell
44	chr5:145235600-145235800	Bivalent/Poised TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr5:145235600-145235800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
46	chr5:145235600-145235800	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
47	chr5:145235600-145235800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr5:145235600-145235800	Enhancers	Primary monocytes fromperipheralblood	blood
49	chr5:145235600-145235800	Enhancers	Aorta	Aorta
50	chr5:145235600-145235800	Enhancers	Brain Angular Gyrus	brain

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