Variant report

Variant	rs10079977
Chromosome Location	chr5:145216591-145216592
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10055406	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10058783	0.81[JPT][hapmap]
rs12658784	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13359571	1.00[CEU][hapmap];0.85[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1432768	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs28457816	0.84[EUR][1000 genomes]
rs28516482	0.83[EUR][1000 genomes]
rs3957706	0.81[JPT][hapmap]
rs3995495	0.81[JPT][hapmap]
rs62392355	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6860802	0.92[CEU][hapmap];0.88[GIH][hapmap];0.92[TSI][hapmap];0.83[EUR][1000 genomes]
rs722714	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:145215600-145217000	Enhancers	Fetal Intestine Large	intestine
2	chr5:145215800-145216600	Enhancers	Fetal Intestine Small	intestine
3	chr5:145215800-145216800	Enhancers	Duodenum Mucosa	Duodenum
4	chr5:145215800-145217800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr5:145215800-145217800	Weak transcription	Right Atrium	heart
6	chr5:145215800-145219600	Weak transcription	NHEK	skin
7	chr5:145215800-145221200	Weak transcription	Psoas Muscle	Psoas
8	chr5:145216000-145216600	Enhancers	HepG2	liver
9	chr5:145216000-145216800	Enhancers	Rectal Mucosa Donor 31	rectum
10	chr5:145216000-145217000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr5:145216000-145217400	Weak transcription	K562	blood
12	chr5:145216000-145217600	Weak transcription	Stomach Mucosa	stomach
13	chr5:145216000-145217800	Weak transcription	Fetal Heart	heart
14	chr5:145216000-145219800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr5:145216000-145227200	Weak transcription	Placenta Amnion	Placenta Amnion

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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