Variant report

Variant	rs28457816
Chromosome Location	chr5:145231831-145231832
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:145224836..145227522-chr5:145230505..145232627,3	K562	blood:
2	chr5:145213109..145215040-chr5:145230719..145232412,2	MCF-7	breast:
3	chr5:145230827..145232577-chr5:145232583..145235834,3	K562	blood:
4	chr5:145214403..145219656-chr5:145231779..145235549,6	K562	blood:

Variant related genes	Relation type
ENSG00000186314	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10055406	0.97[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs10079977	0.84[EUR][1000 genomes]
rs13359571	0.84[EUR][1000 genomes]
rs1432768	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28516482	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62392355	0.83[EUR][1000 genomes]
rs6860802	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs722714	0.88[EUR][1000 genomes]

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:145225400-145234400	Weak transcription	Gastric	stomach
2	chr5:145225600-145232600	Weak transcription	Aorta	Aorta
3	chr5:145227000-145235400	Weak transcription	Fetal Heart	heart
4	chr5:145228600-145234200	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr5:145228600-145234200	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr5:145228600-145234200	Weak transcription	HSMM	muscle
7	chr5:145228800-145234000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr5:145228800-145234000	Weak transcription	NH-A	brain
9	chr5:145228800-145234000	Weak transcription	Osteobl	bone
10	chr5:145228800-145234200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr5:145229000-145234000	Weak transcription	Hela-S3	cervix
12	chr5:145229000-145234000	Weak transcription	HMEC	breast
13	chr5:145229000-145234000	Weak transcription	HUVEC	blood vessel
14	chr5:145229000-145234000	Weak transcription	NHDF-Ad	bronchial
15	chr5:145229000-145234200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr5:145229000-145234200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr5:145229200-145234000	Weak transcription	NHEK	skin
18	chr5:145229200-145234200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr5:145229200-145234200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr5:145230200-145232600	Weak transcription	Small Intestine	intestine
21	chr5:145231000-145235800	Enhancers	Fetal Intestine Large	intestine
22	chr5:145231400-145233600	Enhancers	Duodenum Mucosa	Duodenum
23	chr5:145231400-145233800	Enhancers	K562	blood
24	chr5:145231400-145236000	Enhancers	Fetal Intestine Small	intestine
25	chr5:145231600-145232600	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr5:145231600-145234000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr5:145231600-145234400	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr5:145231800-145233400	Enhancers	Rectal Mucosa Donor 31	rectum
29	chr5:145231800-145233800	Weak transcription	Stomach Mucosa	stomach

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