Variant report

Variant	rs13359571
Chromosome Location	chr5:145219445-145219446
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10055406	0.93[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10058783	0.81[JPT][hapmap]
rs10079977	1.00[CEU][hapmap];0.85[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12658784	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1432768	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs28457816	0.84[EUR][1000 genomes]
rs28516482	0.83[EUR][1000 genomes]
rs3957706	0.81[JPT][hapmap]
rs3995495	0.81[JPT][hapmap]
rs62392355	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6860802	0.92[CEU][hapmap];0.88[GIH][hapmap];0.88[MKK][hapmap];0.92[TSI][hapmap];0.83[EUR][1000 genomes]
rs722714	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13359571	PRELID2	cis	lymphoblastoid	seeQTL

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:145215800-145219600	Weak transcription	NHEK	skin
2	chr5:145215800-145221200	Weak transcription	Psoas Muscle	Psoas
3	chr5:145216000-145219800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr5:145216000-145227200	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr5:145217400-145221600	Enhancers	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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