Variant report

Variant	rs10058783
Chromosome Location	chr5:145234329-145234330
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:145212960..145219188-chr5:145232213..145235932,5	K562	blood:
2	chr5:145233530..145236507-chr5:145244949..145247548,2	K562	blood:
3	chr5:145228764..145230631-chr5:145231918..145234409,3	K562	blood:
4	chr5:145200389..145203270-chr5:145232489..145236140,3	K562	blood:
5	chr5:145213641..145216499-chr5:145233282..145236150,2	MCF-7	breast:
6	chr5:145200389..145201960-chr5:145232489..145234777,2	K562	blood:
7	chr5:145214403..145219656-chr5:145231779..145235549,6	K562	blood:
8	chr5:145230827..145232577-chr5:145232583..145235834,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000186314	Chromatin interaction

rs_ID	r²[population]
rs10050400	0.80[YRI][hapmap]
rs10055406	0.84[JPT][hapmap]
rs10055545	0.89[YRI][hapmap]
rs10062926	0.81[ASN][1000 genomes]
rs10079977	0.81[JPT][hapmap]
rs10477291	0.80[YRI][hapmap]
rs13359571	0.81[JPT][hapmap]
rs28673057	0.91[AFR][1000 genomes]
rs3957706	0.90[CHB][hapmap];0.92[JPT][hapmap];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3995495	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:145225400-145234400	Weak transcription	Gastric	stomach
2	chr5:145227000-145235400	Weak transcription	Fetal Heart	heart
3	chr5:145231000-145235800	Enhancers	Fetal Intestine Large	intestine
4	chr5:145231400-145236000	Enhancers	Fetal Intestine Small	intestine
5	chr5:145231600-145234400	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr5:145232800-145235600	Weak transcription	Aorta	Aorta
7	chr5:145232800-145235800	Weak transcription	Pancreas	Pancrea
8	chr5:145233000-145234400	Weak transcription	Right Atrium	heart
9	chr5:145233200-145234600	Active TSS	Rectal Mucosa Donor 29	rectum
10	chr5:145233200-145235800	Weak transcription	Colonic Mucosa	Colon
11	chr5:145233400-145235600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr5:145233400-145235600	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr5:145233600-145234600	Weak transcription	Duodenum Mucosa	Duodenum
14	chr5:145233600-145234600	Enhancers	HepG2	liver
15	chr5:145233800-145235000	Flanking Active TSS	K562	blood
16	chr5:145233800-145235400	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr5:145233800-145236400	Enhancers	Stomach Mucosa	stomach
18	chr5:145234000-145234400	Weak transcription	Primary hematopoietic stem cells	blood
19	chr5:145234000-145234600	Active TSS	Rectal Mucosa Donor 31	rectum
20	chr5:145234000-145235000	Enhancers	Hela-S3	cervix
21	chr5:145234000-145235400	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr5:145234000-145235600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr5:145234000-145235600	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr5:145234000-145235600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr5:145234000-145235600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr5:145234000-145235600	Enhancers	NHEK	skin
27	chr5:145234000-145235600	Enhancers	Osteobl	bone
28	chr5:145234000-145235800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr5:145234000-145235800	Enhancers	HUVEC	blood vessel
30	chr5:145234000-145235800	Enhancers	NH-A	brain
31	chr5:145234000-145235800	Enhancers	NHDF-Ad	bronchial
32	chr5:145234000-145236000	Enhancers	HMEC	breast
33	chr5:145234000-145236400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr5:145234000-145236400	Enhancers	Small Intestine	intestine
35	chr5:145234200-145234400	Enhancers	iPS-15b Cell Line	embryonic stem cell
36	chr5:145234200-145234400	Enhancers	Primary hematopoietic stem cells short term culture	blood
37	chr5:145234200-145234400	Enhancers	Lung	lung
38	chr5:145234200-145234400	Enhancers	Psoas Muscle	Psoas
39	chr5:145234200-145234600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr5:145234200-145234600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr5:145234200-145234800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr5:145234200-145234800	Enhancers	Esophagus	oesophagus
43	chr5:145234200-145234800	Enhancers	Placenta Amnion	Placenta Amnion
44	chr5:145234200-145234800	Flanking Active TSS	A549	lung
45	chr5:145234200-145234800	Enhancers	HSMMtube	muscle
46	chr5:145234200-145235000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr5:145234200-145235200	Enhancers	HSMM	muscle
48	chr5:145234200-145235600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr5:145234200-145235600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr5:145234200-145235600	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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