Variant report

Variant	rs286746
Chromosome Location	chr5:107404359-107404360
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs158414	0.85[AMR][1000 genomes]
rs158416	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs158420	0.85[AMR][1000 genomes]
rs286745	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs286754	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs286758	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs286782	0.85[AMR][1000 genomes]
rs286784	0.85[AMR][1000 genomes]
rs286787	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs286789	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs286792	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs286795	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs289231	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs289233	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs56159704	0.85[AMR][1000 genomes]
rs57486712	0.85[AMR][1000 genomes]
rs73778620	0.85[AMR][1000 genomes]
rs73778623	0.85[AMR][1000 genomes]
rs73778625	0.85[AMR][1000 genomes]
rs73778642	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv534281	chr5:107357579-107674981	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1029650	chr5:107370079-107435314	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107388400-107510800	Weak transcription	Primary B cells from cord blood	blood
2	chr5:107396800-107409400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr5:107400200-107414600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr5:107403800-107405200	Weak transcription	Fetal Lung	lung
5	chr5:107403800-107429800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr5:107404000-107410200	Weak transcription	Pancreatic Islets	Pancreatic Islet

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links