Variant report

Variant	rs286758
Chromosome Location	chr5:107396777-107396778
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs158414	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs158416	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs158420	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs286745	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs286746	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs286754	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs286782	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs286784	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs286787	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs286789	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs286792	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs286795	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs289229	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs289231	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs289233	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56159704	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57486712	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73778620	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73778623	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73778625	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73778642	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv534281	chr5:107357579-107674981	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1029650	chr5:107370079-107435314	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107388400-107510800	Weak transcription	Primary B cells from cord blood	blood
2	chr5:107390600-107397600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr5:107390600-107401600	Weak transcription	Left Ventricle	heart
4	chr5:107395400-107398800	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr5:107395400-107400000	Weak transcription	Psoas Muscle	Psoas
6	chr5:107396400-107396800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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