Variant report

Variant	rs286782
Chromosome Location	chr5:107420343-107420344
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs158414	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs158416	0.90[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs158420	0.95[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs286745	0.95[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs286746	0.85[AMR][1000 genomes]
rs286754	0.94[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs286758	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs286784	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs286787	0.95[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs286789	0.95[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs286792	0.95[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs286795	0.95[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs289229	0.94[YRI][hapmap];0.91[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs289231	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs289233	0.95[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56159704	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57486712	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73778620	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73778623	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73778625	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73778642	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv534281	chr5:107357579-107674981	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1029650	chr5:107370079-107435314	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107388400-107510800	Weak transcription	Primary B cells from cord blood	blood
2	chr5:107403800-107429800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr5:107412200-107420600	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr5:107414800-107427800	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr5:107415000-107421000	Weak transcription	Pancreas	Pancrea
6	chr5:107416000-107443600	Weak transcription	Primary T cells from cord blood	blood
7	chr5:107416200-107424200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr5:107416800-107427400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr5:107417200-107420400	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr5:107418000-107421000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr5:107418600-107421200	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr5:107419000-107421000	Weak transcription	Adipose Nuclei	Adipose
13	chr5:107419200-107421000	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr5:107419200-107436600	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr5:107419600-107420400	Enhancers	Fetal Lung	lung
16	chr5:107419600-107420800	Weak transcription	Right Atrium	heart
17	chr5:107419600-107421000	Weak transcription	Placenta	Placenta
18	chr5:107420000-107420800	Weak transcription	Gastric	stomach
19	chr5:107420000-107421000	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr5:107420000-107421200	Weak transcription	Left Ventricle	heart
21	chr5:107420000-107424800	Weak transcription	Fetal Intestine Small	intestine
22	chr5:107420000-107433000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr5:107420200-107421200	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr5:107420200-107422600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr5:107420200-107424400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr5:107420200-107426600	Weak transcription	Brain Hippocampus Middle	brain
27	chr5:107420200-107426800	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr5:107420200-107427800	Weak transcription	H9 Cell Line	embryonic stem cell

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