Variant report

Variant	rs28677144
Chromosome Location	chr4:20371879-20371880
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10050017	1.00[AFR][1000 genomes]
rs10050021	1.00[AFR][1000 genomes]
rs28490206	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1842873	chr4:20361842-20399168	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:20353800-20375600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:20364000-20375400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr4:20366000-20375600	Weak transcription	Brain Cingulate Gyrus	brain
4	chr4:20368200-20372600	Enhancers	NHLF	lung
5	chr4:20368400-20372200	Enhancers	NHDF-Ad	bronchial
6	chr4:20368600-20372400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr4:20369400-20372400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr4:20369800-20375600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr4:20370200-20372200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr4:20370200-20372400	Enhancers	Fetal Stomach	stomach
11	chr4:20371000-20372200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr4:20371000-20375600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr4:20371000-20375800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr4:20371200-20375400	Weak transcription	Osteobl	bone
15	chr4:20371400-20372200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr4:20371400-20375400	Weak transcription	Aorta	Aorta
17	chr4:20371400-20375400	Weak transcription	Brain Hippocampus Middle	brain
18	chr4:20371600-20372400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr4:20371600-20372800	Enhancers	Fetal Lung	lung
20	chr4:20371600-20375400	Weak transcription	Brain Substantia Nigra	brain

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