Variant report

Variant	rs28490206
Chromosome Location	chr4:20368351-20368352
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10023635	0.87[AFR][1000 genomes]
rs10050017	0.93[AFR][1000 genomes]
rs10050021	0.93[AFR][1000 genomes]
rs12171436	0.87[AFR][1000 genomes]
rs28404602	0.87[AFR][1000 genomes]
rs28404884	0.87[AFR][1000 genomes]
rs28550076	0.87[AFR][1000 genomes]
rs28648472	0.87[AFR][1000 genomes]
rs28677144	0.93[AFR][1000 genomes]
rs9993391	0.87[AFR][1000 genomes]
rs9994040	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1842873	chr4:20361842-20399168	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:20353400-20369200	Weak transcription	Pancreas	Pancrea
2	chr4:20353600-20369200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr4:20353800-20375600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr4:20357000-20368400	Weak transcription	NHDF-Ad	bronchial
5	chr4:20357000-20369000	Weak transcription	Osteobl	bone
6	chr4:20358600-20371000	Weak transcription	Brain Anterior Caudate	brain
7	chr4:20361000-20368600	Weak transcription	NHEK	skin
8	chr4:20364000-20369400	Weak transcription	Aorta	Aorta
9	chr4:20364000-20370800	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr4:20364000-20375400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr4:20365600-20370800	Weak transcription	Brain Substantia Nigra	brain
12	chr4:20366000-20375600	Weak transcription	Brain Cingulate Gyrus	brain
13	chr4:20366200-20369200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr4:20366400-20371000	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr4:20367000-20370800	Weak transcription	Brain Hippocampus Middle	brain
16	chr4:20367000-20371000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr4:20367400-20368600	Weak transcription	Fetal Lung	lung
18	chr4:20367400-20369200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr4:20368200-20372600	Enhancers	NHLF	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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