Variant report

Variant	rs12171436
Chromosome Location	chr4:20417780-20417781
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10023635	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10050017	1.00[YRI][hapmap]
rs10050021	1.00[YRI][hapmap]
rs28404602	1.00[AFR][1000 genomes]
rs28404884	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28490206	0.87[AFR][1000 genomes]
rs28550076	1.00[AFR][1000 genomes]
rs28648472	0.87[AFR][1000 genomes]
rs9993391	1.00[AFR][1000 genomes]
rs9994040	1.00[YRI][hapmap];1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv593795	chr4:20407591-20418308	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:20405200-20419600	Weak transcription	NHDF-Ad	bronchial
2	chr4:20406200-20420000	Weak transcription	Fetal Lung	lung
3	chr4:20410200-20420200	Weak transcription	NHLF	lung
4	chr4:20414400-20422400	Weak transcription	Fetal Stomach	stomach
5	chr4:20416400-20418600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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