Variant report

Variant	rs28404884
Chromosome Location	chr4:20420315-20420316
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:20314844..20315471-chr4:20420114..20421061,2	MCF-7	breast:
2	chr4:20420248..20420749-chr4:20545895..20546523,2	MCF-7	breast:
3	chr4:20420286..20420873-chr4:20546445..20547011,2	MCF-7	breast:

rs_ID	r²[population]
rs10023635	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12171436	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28404602	1.00[AFR][1000 genomes]
rs28490206	0.87[AFR][1000 genomes]
rs28550076	1.00[AFR][1000 genomes]
rs28648472	0.87[AFR][1000 genomes]
rs9993391	1.00[AFR][1000 genomes]
rs9994040	1.00[AFR][1000 genomes]

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:20414400-20422400	Weak transcription	Fetal Stomach	stomach
2	chr4:20417800-20420600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr4:20418600-20420400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr4:20419800-20420400	Enhancers	Duodenum Smooth Muscle	Duodenum
5	chr4:20420000-20420400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr4:20420000-20420400	Enhancers	Fetal Lung	lung
7	chr4:20420000-20420400	Enhancers	Rectal Smooth Muscle	rectum
8	chr4:20420000-20420800	Active TSS	NHDF-Ad	bronchial
9	chr4:20420000-20420800	Active TSS	Osteobl	bone
10	chr4:20420000-20421000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr4:20420000-20421200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr4:20420200-20420400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
13	chr4:20420200-20420400	Active TSS	Adipose Nuclei	Adipose
14	chr4:20420200-20420400	Enhancers	Liver	Liver
15	chr4:20420200-20420400	Flanking Active TSS	Colon Smooth Muscle	Colon
16	chr4:20420200-20420400	Active TSS	Monocytes-CD14+_RO01746	blood
17	chr4:20420200-20420600	Enhancers	Primary T killer memory cells from peripheral blood	blood
18	chr4:20420200-20420600	Flanking Active TSS	HUVEC	blood vessel
19	chr4:20420200-20420800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr4:20420200-20420800	Active TSS	NHEK	skin
21	chr4:20420200-20421000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr4:20420200-20421000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr4:20420200-20421000	Active TSS	HMEC	breast
24	chr4:20420200-20421000	Active TSS	NHLF	lung
25	chr4:20420200-20421200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr4:20420200-20421400	Active TSS	Brain Anterior Caudate	brain

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