Variant report

Variant	rs28404602
Chromosome Location	chr4:20444728-20444729
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10023635	1.00[AFR][1000 genomes]
rs12171436	1.00[AFR][1000 genomes]
rs28404884	1.00[AFR][1000 genomes]
rs28490206	0.87[AFR][1000 genomes]
rs28550076	1.00[AFR][1000 genomes]
rs28648472	0.87[AFR][1000 genomes]
rs9993391	1.00[AFR][1000 genomes]
rs9994040	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878741	chr4:20440476-20486230	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:20434800-20446000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr4:20444000-20449000	Enhancers	Colon Smooth Muscle	Colon
3	chr4:20444200-20445800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr4:20444200-20446600	Enhancers	Fetal Stomach	stomach
5	chr4:20444200-20449600	Enhancers	Fetal Lung	lung
6	chr4:20444400-20445200	Weak transcription	Fetal Kidney	kidney
7	chr4:20444400-20446800	Enhancers	Rectal Smooth Muscle	rectum

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links