Variant report

Variant	rs10050017
Chromosome Location	chr4:20357217-20357218
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10023635	1.00[YRI][hapmap]
rs10050021	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs12171436	1.00[YRI][hapmap]
rs28490206	0.93[AFR][1000 genomes]
rs28677144	1.00[AFR][1000 genomes]
rs9994040	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv593792	chr4:20275477-20362716	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:20350600-20358400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr4:20353400-20358400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr4:20353400-20369200	Weak transcription	Pancreas	Pancrea
4	chr4:20353600-20358000	Weak transcription	Brain Angular Gyrus	brain
5	chr4:20353600-20358400	Weak transcription	Colon Smooth Muscle	Colon
6	chr4:20353600-20369200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr4:20353800-20357800	Weak transcription	Brain Substantia Nigra	brain
8	chr4:20353800-20375600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr4:20354400-20358000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr4:20354400-20359400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr4:20354800-20359600	Weak transcription	NHEK	skin
12	chr4:20355200-20358000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr4:20355200-20358400	Enhancers	Brain Cingulate Gyrus	brain
14	chr4:20355200-20359000	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr4:20356000-20358400	Enhancers	Pancreatic Islets	Pancreatic Islet
16	chr4:20356200-20357800	Weak transcription	Fetal Lung	lung
17	chr4:20356200-20358400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr4:20356200-20363800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr4:20356400-20358000	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr4:20356400-20358600	Enhancers	Duodenum Smooth Muscle	Duodenum
21	chr4:20356800-20357800	Weak transcription	Brain Anterior Caudate	brain
22	chr4:20356800-20358200	Enhancers	Brain Hippocampus Middle	brain
23	chr4:20357000-20358200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr4:20357000-20358200	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr4:20357000-20358200	Weak transcription	Fetal Kidney	kidney
26	chr4:20357000-20368400	Weak transcription	NHDF-Ad	bronchial
27	chr4:20357000-20369000	Weak transcription	Osteobl	bone
28	chr4:20357200-20358000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr4:20357200-20358600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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