Variant report
| Variant | rs28684948 |
|---|---|
| Chromosome Location | chr7:14548613-14548614 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:36)
| rs_ID | r2[population] |
|---|---|
| rs10226821 | 1.00[AMR][1000 genomes] |
| rs10264050 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28403419 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs28582236 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs55782903 | 1.00[EUR][1000 genomes] |
| rs55809480 | 1.00[EUR][1000 genomes] |
| rs56307021 | 1.00[AMR][1000 genomes] |
| rs56938715 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs57875621 | 1.00[EUR][1000 genomes] |
| rs60120032 | 1.00[EUR][1000 genomes] |
| rs60452338 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs60544805 | 1.00[EUR][1000 genomes] |
| rs61163499 | 1.00[AMR][1000 genomes] |
| rs6947404 | 1.00[EUR][1000 genomes] |
| rs73285810 | 1.00[EUR][1000 genomes] |
| rs73285813 | 1.00[EUR][1000 genomes] |
| rs73285823 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73285839 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73285845 | 1.00[EUR][1000 genomes] |
| rs73285863 | 1.00[EUR][1000 genomes] |
| rs73680178 | 1.00[EUR][1000 genomes] |
| rs73680431 | 1.00[EUR][1000 genomes] |
| rs73680434 | 1.00[EUR][1000 genomes] |
| rs73680435 | 1.00[EUR][1000 genomes] |
| rs73680447 | 1.00[EUR][1000 genomes] |
| rs73680449 | 1.00[EUR][1000 genomes] |
| rs73680450 | 1.00[EUR][1000 genomes] |
| rs73680451 | 1.00[EUR][1000 genomes] |
| rs73680453 | 1.00[EUR][1000 genomes] |
| rs73680454 | 1.00[EUR][1000 genomes] |
| rs73680455 | 1.00[EUR][1000 genomes] |
| rs73680493 | 1.00[EUR][1000 genomes] |
| rs73680494 | 1.00[EUR][1000 genomes] |
| rs73682403 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73682406 | 1.00[AMR][1000 genomes] |
| rs73682407 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949033 | chr7:14086106-14860323 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv915603 | chr7:14443884-14624268 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | esv1848567 | chr7:14464118-14579801 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv887707 | chr7:14471682-14576163 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv887708 | chr7:14494508-14617982 | Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 6 | esv1800100 | chr7:14511454-14564068 | Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 7 | nsv606282 | chr7:14542836-14579801 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | n/a | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:14547200-14548800 | Enhancers | Muscle Satellite Cultured Cells | -- |
| 2 | chr7:14548000-14551400 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 3 | chr7:14548400-14549200 | Weak transcription | Cortex derived primary cultured neurospheres | brain |
