Variant report
| Variant | rs73680434 |
|---|---|
| Chromosome Location | chr7:14613081-14613082 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:38)
| rs_ID | r2[population] |
|---|---|
| rs10085625 | 1.00[EUR][1000 genomes] |
| rs10238323 | 1.00[EUR][1000 genomes] |
| rs28403419 | 1.00[EUR][1000 genomes] |
| rs28582236 | 1.00[EUR][1000 genomes] |
| rs28684948 | 1.00[EUR][1000 genomes] |
| rs55782903 | 1.00[EUR][1000 genomes] |
| rs55809480 | 1.00[EUR][1000 genomes] |
| rs55954033 | 1.00[EUR][1000 genomes] |
| rs56938715 | 1.00[EUR][1000 genomes] |
| rs57875621 | 1.00[EUR][1000 genomes] |
| rs60120032 | 1.00[EUR][1000 genomes] |
| rs60452338 | 1.00[EUR][1000 genomes] |
| rs60544805 | 1.00[EUR][1000 genomes] |
| rs61272991 | 1.00[EUR][1000 genomes] |
| rs6947404 | 1.00[EUR][1000 genomes] |
| rs73285810 | 1.00[EUR][1000 genomes] |
| rs73285813 | 1.00[EUR][1000 genomes] |
| rs73285823 | 1.00[EUR][1000 genomes] |
| rs73285839 | 1.00[EUR][1000 genomes] |
| rs73285845 | 1.00[EUR][1000 genomes] |
| rs73285863 | 1.00[EUR][1000 genomes] |
| rs73680178 | 1.00[EUR][1000 genomes] |
| rs73680193 | 1.00[EUR][1000 genomes] |
| rs73680202 | 1.00[EUR][1000 genomes] |
| rs73680431 | 0.87[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73680435 | 1.00[EUR][1000 genomes] |
| rs73680447 | 1.00[EUR][1000 genomes] |
| rs73680449 | 1.00[EUR][1000 genomes] |
| rs73680450 | 1.00[EUR][1000 genomes] |
| rs73680451 | 1.00[EUR][1000 genomes] |
| rs73680453 | 1.00[EUR][1000 genomes] |
| rs73680454 | 1.00[EUR][1000 genomes] |
| rs73680455 | 1.00[EUR][1000 genomes] |
| rs73680493 | 1.00[EUR][1000 genomes] |
| rs73680494 | 1.00[EUR][1000 genomes] |
| rs73682503 | 1.00[EUR][1000 genomes] |
| rs73682511 | 1.00[EUR][1000 genomes] |
| rs73682513 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949033 | chr7:14086106-14860323 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv915603 | chr7:14443884-14624268 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv887708 | chr7:14494508-14617982 | Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv887710 | chr7:14587948-14653702 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 5 | nsv606284 | chr7:14594236-14619026 | Weak transcription ZNF genes & repeats Enhancers | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:14603800-14624200 | Weak transcription | Ganglion Eminence derived primary cultured neurospheres | brain |
| 2 | chr7:14604200-14624000 | Weak transcription | Cortex derived primary cultured neurospheres | brain |
| 3 | chr7:14610000-14621200 | Weak transcription | Brain Inferior Temporal Lobe | brain |
