Variant report

Variant	rs56938715
Chromosome Location	chr7:14546120-14546121
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10226821	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10264050	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28403419	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28582236	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28684948	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55782903	1.00[EUR][1000 genomes]
rs55809480	1.00[EUR][1000 genomes]
rs56307021	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57875621	1.00[EUR][1000 genomes]
rs60120032	1.00[EUR][1000 genomes]
rs60452338	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60544805	1.00[EUR][1000 genomes]
rs61163499	1.00[AMR][1000 genomes]
rs6947404	1.00[EUR][1000 genomes]
rs73285810	1.00[EUR][1000 genomes]
rs73285813	1.00[EUR][1000 genomes]
rs73285823	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73285839	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73285845	1.00[EUR][1000 genomes]
rs73285863	1.00[EUR][1000 genomes]
rs73680431	1.00[EUR][1000 genomes]
rs73680434	1.00[EUR][1000 genomes]
rs73680435	1.00[EUR][1000 genomes]
rs73680447	1.00[EUR][1000 genomes]
rs73680449	1.00[EUR][1000 genomes]
rs73680450	1.00[EUR][1000 genomes]
rs73680451	1.00[EUR][1000 genomes]
rs73680453	1.00[EUR][1000 genomes]
rs73680454	1.00[EUR][1000 genomes]
rs73680455	1.00[EUR][1000 genomes]
rs73680493	1.00[EUR][1000 genomes]
rs73680494	1.00[EUR][1000 genomes]
rs73682403	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73682406	1.00[AMR][1000 genomes]
rs73682407	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv915603	chr7:14443884-14624268	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv1848567	chr7:14464118-14579801	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv887707	chr7:14471682-14576163	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv887708	chr7:14494508-14617982	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv1800100	chr7:14511454-14564068	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv606282	chr7:14542836-14579801	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14544600-14548400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr7:14544800-14546400	Weak transcription	Fetal Heart	heart
3	chr7:14545400-14546200	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr7:14545400-14547200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr7:14545600-14546200	Enhancers	NHEK	skin
6	chr7:14545600-14547200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr7:14545600-14547200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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