Variant report

Variant	rs55954033
Chromosome Location	chr7:14762833-14762834
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10085625	1.00[EUR][1000 genomes]
rs10238323	1.00[EUR][1000 genomes]
rs10251472	1.00[EUR][1000 genomes]
rs1404622	1.00[EUR][1000 genomes]
rs1614700	1.00[EUR][1000 genomes]
rs1723242	1.00[EUR][1000 genomes]
rs55782903	1.00[EUR][1000 genomes]
rs55809480	1.00[EUR][1000 genomes]
rs56905045	1.00[EUR][1000 genomes]
rs60120032	1.00[EUR][1000 genomes]
rs60544805	1.00[EUR][1000 genomes]
rs61058262	1.00[EUR][1000 genomes]
rs61147906	1.00[EUR][1000 genomes]
rs61272991	1.00[EUR][1000 genomes]
rs6947404	1.00[EUR][1000 genomes]
rs73276014	1.00[EUR][1000 genomes]
rs73280239	1.00[EUR][1000 genomes]
rs73680178	1.00[EUR][1000 genomes]
rs73680193	1.00[EUR][1000 genomes]
rs73680202	1.00[EUR][1000 genomes]
rs73680304	1.00[EUR][1000 genomes]
rs73680340	1.00[EUR][1000 genomes]
rs73680357	1.00[EUR][1000 genomes]
rs73680431	1.00[EUR][1000 genomes]
rs73680434	1.00[EUR][1000 genomes]
rs73680435	1.00[EUR][1000 genomes]
rs73680447	1.00[EUR][1000 genomes]
rs73680449	1.00[EUR][1000 genomes]
rs73680450	1.00[EUR][1000 genomes]
rs73680451	1.00[EUR][1000 genomes]
rs73680453	1.00[EUR][1000 genomes]
rs73680454	1.00[EUR][1000 genomes]
rs73680455	1.00[EUR][1000 genomes]
rs73680493	1.00[EUR][1000 genomes]
rs73680494	1.00[EUR][1000 genomes]
rs73682503	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73682511	1.00[EUR][1000 genomes]
rs73682513	1.00[EUR][1000 genomes]
rs73682548	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1031041	chr7:14624127-14999201	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv538741	chr7:14624127-14999201	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv887712	chr7:14717872-14829858	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14712800-14775200	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr7:14758800-14763000	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr7:14761200-14763000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr7:14761800-14763000	Weak transcription	Colon Smooth Muscle	Colon
5	chr7:14762000-14763800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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