Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10002442	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1112880	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1112881	0.81[EUR][1000 genomes]
rs11723025	0.80[AMR][1000 genomes]
rs11724815	0.85[AMR][1000 genomes]
rs13125120	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13130117	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17005046	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17005047	0.85[EUR][1000 genomes]
rs28454856	0.96[EUR][1000 genomes]
rs2868131	0.85[EUR][1000 genomes]
rs28754452	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2903748	0.85[EUR][1000 genomes]
rs34281791	0.96[EUR][1000 genomes]
rs3796804	0.85[EUR][1000 genomes]
rs4565072	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6833113	0.83[AMR][1000 genomes]
rs7657739	0.83[AMR][1000 genomes]
rs7671128	0.85[EUR][1000 genomes]
rs7679480	0.83[AMR][1000 genomes]
rs7695150	0.85[EUR][1000 genomes]
rs7700247	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999729	chr4:81802554-82627820	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv537156	chr4:81802554-82627820	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1006466	chr4:81888983-82009675	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv829984	chr4:81979988-82113977	Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:81998200-82030000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:82002600-82005400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr4:82003600-82006800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr4:82004000-82005600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr4:82004000-82017200	Weak transcription	Fetal Intestine Small	intestine

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