Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10002442	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10016905	0.90[EUR][1000 genomes]
rs1112880	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1112881	0.90[EUR][1000 genomes]
rs1113771	0.98[EUR][1000 genomes]
rs11723025	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11724815	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13125120	0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs13130117	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1443545	0.86[EUR][1000 genomes]
rs17005046	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs17005047	0.87[EUR][1000 genomes]
rs28454856	0.94[ASN][1000 genomes]
rs2868131	0.87[EUR][1000 genomes]
rs2868134	0.98[EUR][1000 genomes]
rs28685252	0.83[AMR][1000 genomes]
rs28754452	0.88[ASN][1000 genomes]
rs2903748	0.87[EUR][1000 genomes]
rs34281791	0.94[ASN][1000 genomes]
rs34954944	0.92[EUR][1000 genomes]
rs35176186	0.98[EUR][1000 genomes]
rs3796804	0.87[EUR][1000 genomes]
rs4565072	0.88[ASN][1000 genomes]
rs7657739	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7671128	0.87[EUR][1000 genomes]
rs7679480	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7695150	0.87[EUR][1000 genomes]
rs7700247	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999729	chr4:81802554-82627820	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv537156	chr4:81802554-82627820	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv829984	chr4:81979988-82113977	Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:81998200-82030000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:82006200-82024800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr4:82006800-82024800	Weak transcription	NHDF-Ad	bronchial
4	chr4:82013000-82033200	Weak transcription	NHLF	lung
5	chr4:82016800-82023200	Weak transcription	Fetal Brain Male	brain
6	chr4:82017600-82028600	Weak transcription	Fetal Intestine Small	intestine
7	chr4:82017800-82020800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr4:82018400-82023200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr4:82019600-82020400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr4:82019800-82020400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr4:82019800-82025000	Weak transcription	Fetal Intestine Large	intestine

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