Variant report

Variant	rs28688522
Chromosome Location	chr5:43338840-43338841
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10038859	0.85[AMR][1000 genomes]
rs10054415	0.85[AMR][1000 genomes]
rs10062598	0.85[AMR][1000 genomes]
rs10064967	0.85[AMR][1000 genomes]
rs10067763	0.83[AFR][1000 genomes]
rs1478436	0.85[AMR][1000 genomes]
rs16874093	0.85[AMR][1000 genomes]
rs16874094	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs28608156	0.85[AMR][1000 genomes]
rs28856961	0.85[AMR][1000 genomes]
rs4326149	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs55645370	0.85[AMR][1000 genomes]
rs6893898	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7356654	0.85[AMR][1000 genomes]
rs73751075	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73751078	0.85[AMR][1000 genomes]
rs7710717	0.83[AFR][1000 genomes]
rs7715267	0.85[AMR][1000 genomes]
rs7729140	0.83[AFR][1000 genomes]
rs7729145	0.83[AFR][1000 genomes]
rs9292869	0.85[AMR][1000 genomes]
rs9292870	0.89[AFR][1000 genomes]
rs9292872	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023741	chr5:42768215-43348145	Flanking Active TSS Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	309 gene(s)	inside rSNPs	diseases
2	nsv537737	chr5:42768215-43348145	Genic enhancers Enhancers Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	309 gene(s)	inside rSNPs	diseases
3	nsv508352	chr5:43237830-43391062	Enhancers Strong transcription Genic enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:43338200-43339200	Enhancers	Monocytes-CD14+_RO01746	blood
2	chr5:43338800-43339000	Weak transcription	Primary monocytes fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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