Variant report

Variant	rs16874094
Chromosome Location	chr5:43352768-43352769
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:43313084..43315493-chr5:43350846..43353946,3	MCF-7	breast:
2	chr5:43311926..43313537-chr5:43352159..43354596,2	MCF-7	breast:
3	chr5:43352697..43356285-chr5:43368873..43371600,3	K562	blood:

Variant related genes	Relation type
ENSG00000112972	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10037409	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10037706	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap]
rs10038859	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10040897	0.91[AFR][1000 genomes]
rs10043148	1.00[CEU][hapmap];0.83[YRI][hapmap]
rs10052384	0.83[AFR][1000 genomes]
rs10054415	1.00[CEU][hapmap];0.84[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10056437	1.00[CEU][hapmap]
rs10062598	1.00[CEU][hapmap];0.94[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10064967	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10067763	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs10069507	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap]
rs10473306	1.00[CEU][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs10473308	1.00[CEU][hapmap];0.84[YRI][hapmap];0.87[AMR][1000 genomes]
rs1478436	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16874093	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28608156	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28688522	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs28856961	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4326149	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55645370	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60520238	0.85[AFR][1000 genomes]
rs6865440	1.00[GIH][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.82[YRI][hapmap];0.83[AFR][1000 genomes]
rs6884349	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.89[YRI][hapmap];0.81[AFR][1000 genomes]
rs6887169	1.00[MEX][hapmap]
rs6892413	0.83[AFR][1000 genomes]
rs6893898	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6894240	1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs6895237	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap]
rs7356654	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7356727	0.87[AMR][1000 genomes]
rs73751075	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73751078	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73751082	0.83[AFR][1000 genomes]
rs73751083	0.83[AFR][1000 genomes]
rs7710717	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs7715267	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7729140	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs7729145	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs7733732	1.00[CEU][hapmap];0.82[YRI][hapmap];0.87[AFR][1000 genomes]
rs9292869	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9292870	1.00[CEU][hapmap];1.00[GIH][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];0.88[YRI][hapmap];0.85[AMR][1000 genomes]
rs9292872	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs9292875	1.00[CEU][hapmap];0.84[YRI][hapmap];0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508352	chr5:43237830-43391062	Enhancers Strong transcription Genic enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:43350400-43354800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr5:43351200-43357200	Weak transcription	Esophagus	oesophagus
3	chr5:43351600-43356800	Weak transcription	Fetal Intestine Large	intestine
4	chr5:43351600-43356800	Weak transcription	Fetal Intestine Small	intestine
5	chr5:43352400-43352800	Flanking Active TSS	K562	blood

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