Variant report

Variant	rs7356727
Chromosome Location	chr5:43365098-43365099
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10037409	0.87[AFR][1000 genomes]
rs10038859	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs10040897	0.87[AFR][1000 genomes]
rs10054415	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs10062598	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs10064967	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs10473308	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1478436	0.87[AMR][1000 genomes]
rs16874093	0.87[AMR][1000 genomes]
rs16874094	0.87[AMR][1000 genomes]
rs28608156	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs28856961	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs4326149	0.87[AMR][1000 genomes]
rs55645370	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs60520238	0.84[AFR][1000 genomes]
rs6865440	0.80[AFR][1000 genomes]
rs6884349	0.81[AFR][1000 genomes]
rs6893898	0.87[AMR][1000 genomes]
rs7356654	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73751075	0.87[AMR][1000 genomes]
rs73751078	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7715267	0.87[AMR][1000 genomes]
rs7733732	0.86[AFR][1000 genomes]
rs9292869	0.87[AMR][1000 genomes]
rs9292875	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508352	chr5:43237830-43391062	Enhancers Strong transcription Genic enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:43363600-43366200	Weak transcription	Right Atrium	heart
2	chr5:43364000-43367800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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