Variant report

Variant	rs10062598
Chromosome Location	chr5:43363133-43363134
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:43355115..43357670-chr5:43362968..43365854,2	MCF-7	breast:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10037409	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10037706	1.00[CEU][hapmap]
rs10038859	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10040897	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10043148	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10052384	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10054415	1.00[CEU][hapmap];0.90[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10056437	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10062031	1.00[EUR][1000 genomes]
rs10062121	1.00[EUR][1000 genomes]
rs10064967	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10067763	1.00[CEU][hapmap];0.94[YRI][hapmap];0.88[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs10069507	1.00[CEU][hapmap]
rs10077324	0.86[EUR][1000 genomes]
rs10079530	0.86[EUR][1000 genomes]
rs10472379	0.86[EUR][1000 genomes]
rs10473306	1.00[CEU][hapmap];0.94[YRI][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10473308	1.00[CEU][hapmap];0.85[YRI][hapmap];0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11955467	0.86[EUR][1000 genomes]
rs1478436	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16874093	1.00[CEU][hapmap];0.94[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16874094	1.00[CEU][hapmap];0.94[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28450849	1.00[EUR][1000 genomes]
rs28608156	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28688522	0.85[AMR][1000 genomes]
rs28856961	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4326149	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs55645370	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs60520238	0.86[EUR][1000 genomes]
rs6865440	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6884349	1.00[CEU][hapmap];0.83[YRI][hapmap];0.86[EUR][1000 genomes]
rs6892413	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6893898	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6894240	1.00[CEU][hapmap];0.94[YRI][hapmap];0.82[AFR][1000 genomes]
rs6895237	1.00[CEU][hapmap];0.83[YRI][hapmap]
rs7356654	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7356727	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73751075	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73751078	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73751082	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73751083	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7710717	1.00[CEU][hapmap];0.94[YRI][hapmap];0.88[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs7715267	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7729140	1.00[CEU][hapmap];0.94[YRI][hapmap];0.88[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs7729145	1.00[CEU][hapmap];0.94[YRI][hapmap];0.88[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs7733732	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs9292869	1.00[CEU][hapmap];0.94[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9292870	1.00[CEU][hapmap];0.83[YRI][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9292872	1.00[CEU][hapmap];0.94[YRI][hapmap];0.88[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs9292875	1.00[CEU][hapmap];0.85[YRI][hapmap];0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508352	chr5:43237830-43391062	Enhancers Strong transcription Genic enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:43362200-43364000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:43362600-43364200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr5:43362600-43364200	Enhancers	NHEK	skin
4	chr5:43362800-43364200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr5:43362800-43364200	Enhancers	HMEC	breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links