Variant report

Variant	rs11955467
Chromosome Location	chr5:43265512-43265513
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10037409	0.86[EUR][1000 genomes]
rs10038859	0.86[EUR][1000 genomes]
rs10040897	0.86[EUR][1000 genomes]
rs10043148	0.86[EUR][1000 genomes]
rs10052384	0.86[EUR][1000 genomes]
rs10054415	1.00[EUR][1000 genomes]
rs10056437	0.86[EUR][1000 genomes]
rs10062031	0.86[EUR][1000 genomes]
rs10062121	0.86[EUR][1000 genomes]
rs10062598	0.86[EUR][1000 genomes]
rs10064967	0.86[EUR][1000 genomes]
rs10067763	1.00[EUR][1000 genomes]
rs10077324	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10079530	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10473306	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10473308	0.86[EUR][1000 genomes]
rs1478436	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16874093	1.00[EUR][1000 genomes]
rs28450849	0.86[EUR][1000 genomes]
rs28608156	1.00[EUR][1000 genomes]
rs28856961	0.86[EUR][1000 genomes]
rs4326149	1.00[EUR][1000 genomes]
rs55645370	1.00[EUR][1000 genomes]
rs60520238	1.00[EUR][1000 genomes]
rs6865440	0.86[EUR][1000 genomes]
rs6884349	1.00[EUR][1000 genomes]
rs6892413	0.86[EUR][1000 genomes]
rs6893898	1.00[EUR][1000 genomes]
rs6894240	0.82[AFR][1000 genomes]
rs7356654	0.86[EUR][1000 genomes]
rs73751075	1.00[EUR][1000 genomes]
rs73751078	0.86[EUR][1000 genomes]
rs73751082	0.86[EUR][1000 genomes]
rs73751083	0.86[EUR][1000 genomes]
rs7710717	1.00[EUR][1000 genomes]
rs7715267	1.00[EUR][1000 genomes]
rs7729140	1.00[EUR][1000 genomes]
rs7729145	1.00[EUR][1000 genomes]
rs7733732	1.00[EUR][1000 genomes]
rs9292869	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9292870	1.00[EUR][1000 genomes]
rs9292872	1.00[EUR][1000 genomes]
rs9292875	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023741	chr5:42768215-43348145	Flanking Active TSS Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	309 gene(s)	inside rSNPs	diseases
2	nsv537737	chr5:42768215-43348145	Genic enhancers Enhancers Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	309 gene(s)	inside rSNPs	diseases
3	nsv1024636	chr5:42959979-43295782	Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	283 gene(s)	inside rSNPs	diseases
4	nsv537739	chr5:42959979-43295782	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	283 gene(s)	inside rSNPs	diseases
5	nsv508352	chr5:43237830-43391062	Enhancers Strong transcription Genic enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:43246600-43281400	Weak transcription	Brain Hippocampus Middle	brain
2	chr5:43257400-43274400	Weak transcription	Brain Anterior Caudate	brain

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