Variant report

Variant	rs10079530
Chromosome Location	chr5:43276286-43276287
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:43250825..43252348-chr5:43274259..43276487,2	MCF-7	breast:
2	chr5:43276038..43279820-chr5:43312022..43314782,3	K562	blood:

Variant related genes	Relation type
ENSG00000112972	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10037409	0.86[EUR][1000 genomes]
rs10038859	0.86[EUR][1000 genomes]
rs10040897	0.86[EUR][1000 genomes]
rs10043148	0.86[EUR][1000 genomes]
rs10052384	0.86[EUR][1000 genomes]
rs10054415	1.00[EUR][1000 genomes]
rs10056437	0.86[EUR][1000 genomes]
rs10062031	0.86[EUR][1000 genomes]
rs10062121	0.86[EUR][1000 genomes]
rs10062598	0.86[EUR][1000 genomes]
rs10064967	0.86[EUR][1000 genomes]
rs10067763	1.00[EUR][1000 genomes]
rs10077324	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10473306	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10473308	0.86[EUR][1000 genomes]
rs11955467	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1478436	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16874093	1.00[EUR][1000 genomes]
rs28450849	0.86[EUR][1000 genomes]
rs28608156	1.00[EUR][1000 genomes]
rs28856961	0.86[EUR][1000 genomes]
rs4326149	1.00[EUR][1000 genomes]
rs55645370	1.00[EUR][1000 genomes]
rs60520238	1.00[EUR][1000 genomes]
rs6865440	0.86[EUR][1000 genomes]
rs6884349	1.00[EUR][1000 genomes]
rs6892413	0.86[EUR][1000 genomes]
rs6893898	1.00[EUR][1000 genomes]
rs6894240	0.82[AFR][1000 genomes]
rs7356654	0.86[EUR][1000 genomes]
rs73751075	1.00[EUR][1000 genomes]
rs73751078	0.86[EUR][1000 genomes]
rs73751082	0.86[EUR][1000 genomes]
rs73751083	0.86[EUR][1000 genomes]
rs7710717	1.00[EUR][1000 genomes]
rs7715267	1.00[EUR][1000 genomes]
rs7729140	1.00[EUR][1000 genomes]
rs7729145	1.00[EUR][1000 genomes]
rs7733732	1.00[EUR][1000 genomes]
rs9292869	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9292870	1.00[EUR][1000 genomes]
rs9292872	1.00[EUR][1000 genomes]
rs9292875	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023741	chr5:42768215-43348145	Flanking Active TSS Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	309 gene(s)	inside rSNPs	diseases
2	nsv537737	chr5:42768215-43348145	Genic enhancers Enhancers Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	309 gene(s)	inside rSNPs	diseases
3	nsv1024636	chr5:42959979-43295782	Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	283 gene(s)	inside rSNPs	diseases
4	nsv537739	chr5:42959979-43295782	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	283 gene(s)	inside rSNPs	diseases
5	nsv508352	chr5:43237830-43391062	Enhancers Strong transcription Genic enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:43246600-43281400	Weak transcription	Brain Hippocampus Middle	brain
2	chr5:43270200-43277400	Weak transcription	Brain Angular Gyrus	brain
3	chr5:43271200-43280200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr5:43273600-43279000	Enhancers	Fetal Heart	heart
5	chr5:43274400-43287000	Weak transcription	Left Ventricle	heart
6	chr5:43274600-43279200	Weak transcription	Brain Substantia Nigra	brain
7	chr5:43274600-43285000	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr5:43274600-43286800	Weak transcription	Esophagus	oesophagus
9	chr5:43274800-43277200	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr5:43274800-43286400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr5:43274800-43286600	Weak transcription	Stomach Mucosa	stomach
12	chr5:43275000-43276800	Weak transcription	Brain Anterior Caudate	brain
13	chr5:43275000-43279200	Weak transcription	Adipose Nuclei	Adipose
14	chr5:43275000-43279400	Weak transcription	Brain Cingulate Gyrus	brain
15	chr5:43275000-43286400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr5:43275000-43286400	Weak transcription	GM12878-XiMat	blood
17	chr5:43275000-43286600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr5:43275200-43277200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr5:43275200-43277200	Weak transcription	K562	blood
20	chr5:43275600-43286400	Weak transcription	Fetal Brain Female	brain
21	chr5:43275800-43279000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr5:43275800-43286800	Weak transcription	Liver	Liver
23	chr5:43275800-43286800	Weak transcription	Gastric	stomach

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