Variant report

Variant	rs73751083
Chromosome Location	chr5:43392045-43392046
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:43388497..43392556-chr5:43484061..43485836,3	K562	blood:
2	chr5:43390298..43394980-chr5:43481365..43485431,7	MCF-7	breast:
3	chr5:43389436..43392611-chr5:43482229..43485632,4	MCF-7	breast:
4	chr5:43390020..43396125-chr5:43482403..43486509,6	K562	blood:
5	chr5:43383833..43386305-chr5:43390623..43392480,2	K562	blood:

Variant related genes	Relation type
ENSG00000151881	Chromatin interaction
ENSG00000249492	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10037409	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10038859	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10040897	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10043148	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10052384	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10054415	0.86[EUR][1000 genomes]
rs10056437	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10062031	1.00[EUR][1000 genomes]
rs10062121	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10062598	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10064967	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10067763	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs10077324	0.86[EUR][1000 genomes]
rs10079530	0.86[EUR][1000 genomes]
rs10472379	0.86[EUR][1000 genomes]
rs10473306	0.86[EUR][1000 genomes]
rs10473308	1.00[EUR][1000 genomes]
rs11955467	0.86[EUR][1000 genomes]
rs1478436	0.86[EUR][1000 genomes]
rs16874093	0.86[EUR][1000 genomes]
rs16874094	0.83[AFR][1000 genomes]
rs28450849	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28608156	0.84[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs28856961	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4326149	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs55645370	0.86[EUR][1000 genomes]
rs60520238	0.86[EUR][1000 genomes]
rs6865440	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6884349	0.86[EUR][1000 genomes]
rs6892413	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6893898	0.83[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs7356654	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73751075	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs73751078	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73751082	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7710717	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs7715267	0.86[EUR][1000 genomes]
rs7729140	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs7729145	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs7733732	0.86[EUR][1000 genomes]
rs9292869	0.86[EUR][1000 genomes]
rs9292870	0.86[EUR][1000 genomes]
rs9292872	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs9292875	1.00[EUR][1000 genomes]

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:43368800-43396400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr5:43370000-43396200	Weak transcription	Primary B cells from cord blood	blood
3	chr5:43371800-43396800	Weak transcription	Small Intestine	intestine
4	chr5:43372200-43396800	Weak transcription	Gastric	stomach
5	chr5:43373200-43396400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr5:43374600-43396400	Weak transcription	Adipose Nuclei	Adipose
7	chr5:43375000-43396800	Weak transcription	Spleen	Spleen
8	chr5:43377200-43396800	Weak transcription	Colonic Mucosa	Colon
9	chr5:43378600-43396200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr5:43378800-43396400	Weak transcription	Stomach Smooth Muscle	stomach
11	chr5:43379000-43396400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr5:43379200-43395800	Weak transcription	Placenta	Placenta
13	chr5:43380400-43396400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr5:43382200-43396400	Weak transcription	Primary hematopoietic stem cells	blood
15	chr5:43386000-43396800	Weak transcription	Esophagus	oesophagus
16	chr5:43387600-43396400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr5:43387800-43396200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr5:43388000-43396200	Weak transcription	Thymus	Thymus
19	chr5:43388000-43396400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr5:43388000-43396800	Weak transcription	Lung	lung
21	chr5:43388400-43396400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr5:43388600-43395600	Weak transcription	Primary T cells fromperipheralblood	blood
23	chr5:43388600-43395600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr5:43388600-43396200	Weak transcription	Primary B cells from peripheral blood	blood
25	chr5:43388600-43396200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr5:43388600-43396200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr5:43388600-43396400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr5:43389000-43396200	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr5:43389000-43396400	Weak transcription	Duodenum Mucosa	Duodenum
30	chr5:43389200-43396200	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr5:43389200-43396600	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr5:43389800-43393200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr5:43390200-43395400	Weak transcription	Primary T helper cells fromperipheralblood	blood
34	chr5:43390400-43392600	Weak transcription	Primary T helper cells PMA-I stimulated	--
35	chr5:43390400-43395400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr5:43390400-43395800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr5:43390400-43396200	Weak transcription	Stomach Mucosa	stomach
38	chr5:43390600-43396200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
39	chr5:43390600-43396200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr5:43390800-43393800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr5:43390800-43396400	Weak transcription	Primary T cells from cord blood	blood

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