Variant report

Variant	rs10043148
Chromosome Location	chr5:43399670-43399671
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:43399583..43400925-chr5:43469975..43470821,5	MCF-7	breast:
2	chr5:43395776..43403836-chr5:43482661..43487155,15	MCF-7	breast:
3	chr5:43398637..43404143-chr5:43481703..43486799,11	MCF-7	breast:
4	chr5:43398812..43401433-chr5:43555742..43558269,2	MCF-7	breast:
5	chr5:43064153..43066269-chr5:43399362..43401705,2	K562	blood:
6	chr5:43399020..43399827-chr5:43484480..43485221,2	MCF-7	breast:
7	chr5:43119611..43121796-chr5:43398070..43400646,2	K562	blood:

Variant related genes	Relation type
ENSG00000151881	Chromatin interaction
ENSG00000249492	Chromatin interaction
ENSG00000172262	Chromatin interaction
ENSG00000172239	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10037409	1.00[EUR][1000 genomes]
rs10037706	1.00[CEU][hapmap]
rs10038859	1.00[EUR][1000 genomes]
rs10040897	1.00[EUR][1000 genomes]
rs10052384	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10054415	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs10056437	1.00[CEU][hapmap];0.81[YRI][hapmap];1.00[EUR][1000 genomes]
rs10060729	0.83[AMR][1000 genomes]
rs10062031	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10062121	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10062598	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10064967	1.00[EUR][1000 genomes]
rs10067763	1.00[CEU][hapmap];0.84[YRI][hapmap];0.86[EUR][1000 genomes]
rs10069507	1.00[CEU][hapmap]
rs10077324	0.86[EUR][1000 genomes]
rs10079530	0.86[EUR][1000 genomes]
rs10472379	0.86[EUR][1000 genomes]
rs10473306	1.00[CEU][hapmap];0.84[YRI][hapmap];0.86[EUR][1000 genomes]
rs10473308	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11955467	0.86[EUR][1000 genomes]
rs1478436	0.86[EUR][1000 genomes]
rs16874093	1.00[CEU][hapmap];0.84[YRI][hapmap];0.86[EUR][1000 genomes]
rs16874094	1.00[CEU][hapmap];0.83[YRI][hapmap]
rs28450849	1.00[EUR][1000 genomes]
rs28529669	0.83[AMR][1000 genomes]
rs28608156	0.86[EUR][1000 genomes]
rs28856961	1.00[EUR][1000 genomes]
rs4326149	0.86[EUR][1000 genomes]
rs55645370	0.86[EUR][1000 genomes]
rs60520238	0.86[EUR][1000 genomes]
rs6865440	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6884349	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs6892413	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6893898	0.86[EUR][1000 genomes]
rs6894240	1.00[CEU][hapmap];0.83[YRI][hapmap]
rs6895237	1.00[CEU][hapmap]
rs7356654	1.00[EUR][1000 genomes]
rs73751075	0.86[EUR][1000 genomes]
rs73751078	1.00[EUR][1000 genomes]
rs73751082	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73751083	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7710717	1.00[CEU][hapmap];0.83[YRI][hapmap];0.86[EUR][1000 genomes]
rs7715267	0.86[EUR][1000 genomes]
rs7729140	1.00[CEU][hapmap];0.84[YRI][hapmap];0.86[EUR][1000 genomes]
rs7729145	1.00[CEU][hapmap];0.84[YRI][hapmap];0.86[EUR][1000 genomes]
rs7733732	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs9292869	1.00[CEU][hapmap];0.83[YRI][hapmap];0.86[EUR][1000 genomes]
rs9292870	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs9292872	1.00[CEU][hapmap];0.83[YRI][hapmap];0.86[EUR][1000 genomes]
rs9292875	1.00[CEU][hapmap];1.00[EUR][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:43397000-43404000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr5:43397400-43402000	Weak transcription	Gastric	stomach
3	chr5:43397400-43402800	Weak transcription	Stomach Mucosa	stomach
4	chr5:43397400-43410200	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr5:43397600-43401200	Weak transcription	Duodenum Mucosa	Duodenum
6	chr5:43397600-43402000	Weak transcription	Pancreas	Pancrea
7	chr5:43397600-43402000	Weak transcription	A549	lung
8	chr5:43397600-43409400	Weak transcription	Colonic Mucosa	Colon
9	chr5:43398000-43409000	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr5:43398000-43409400	Weak transcription	Rectal Mucosa Donor 29	rectum

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