Variant report

Variant	rs73751082
Chromosome Location	chr5:43389217-43389218
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:43388497..43392556-chr5:43484061..43485836,3	K562	blood:
2	chr5:43285022..43287763-chr5:43388452..43389966,2	K562	blood:
3	chr5:43311092..43314339-chr5:43385527..43389897,4	MCF-7	breast:
4	chr5:43119482..43123443-chr5:43388047..43390773,3	MCF-7	breast:
5	chr5:43388923..43390425-chr5:43392464..43394027,2	K562	blood:
6	chr5:43040937..43043903-chr5:43388523..43390974,2	K562	blood:
7	chr5:43311951..43313606-chr5:43388549..43390888,2	K562	blood:
8	chr5:43286263..43289141-chr5:43388466..43390424,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000172262	Chromatin interaction
ENSG00000215068	Chromatin interaction
ENSG00000261604	Chromatin interaction
ENSG00000177721	Chromatin interaction
ENSG00000249492	Chromatin interaction
ENSG00000112972	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10037409	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10038859	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10040897	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10043148	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10052384	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10054415	0.86[EUR][1000 genomes]
rs10056437	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10062031	1.00[EUR][1000 genomes]
rs10062121	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10062598	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10064967	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10067763	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs10077324	0.86[EUR][1000 genomes]
rs10079530	0.86[EUR][1000 genomes]
rs10472379	0.86[EUR][1000 genomes]
rs10473306	0.86[EUR][1000 genomes]
rs10473308	1.00[EUR][1000 genomes]
rs11955467	0.86[EUR][1000 genomes]
rs1478436	0.86[EUR][1000 genomes]
rs16874093	0.86[EUR][1000 genomes]
rs16874094	0.83[AFR][1000 genomes]
rs28450849	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28608156	0.84[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs28856961	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4326149	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs55645370	0.86[EUR][1000 genomes]
rs60520238	0.86[EUR][1000 genomes]
rs6865440	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6884349	0.86[EUR][1000 genomes]
rs6892413	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6893898	0.83[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs7356654	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73751075	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs73751078	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73751083	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7710717	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs7715267	0.86[EUR][1000 genomes]
rs7729140	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs7729145	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs7733732	0.86[EUR][1000 genomes]
rs9292869	0.86[EUR][1000 genomes]
rs9292870	0.86[EUR][1000 genomes]
rs9292872	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs9292875	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508352	chr5:43237830-43391062	Enhancers Strong transcription Genic enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:43368600-43389800	Weak transcription	Stomach Mucosa	stomach
2	chr5:43368800-43396400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr5:43370000-43396200	Weak transcription	Primary B cells from cord blood	blood
4	chr5:43371800-43396800	Weak transcription	Small Intestine	intestine
5	chr5:43372200-43396800	Weak transcription	Gastric	stomach
6	chr5:43373200-43396400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr5:43374600-43396400	Weak transcription	Adipose Nuclei	Adipose
8	chr5:43375000-43396800	Weak transcription	Spleen	Spleen
9	chr5:43376200-43389800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr5:43377200-43396800	Weak transcription	Colonic Mucosa	Colon
11	chr5:43378600-43396200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr5:43378800-43396400	Weak transcription	Stomach Smooth Muscle	stomach
13	chr5:43379000-43396400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr5:43379200-43395800	Weak transcription	Placenta	Placenta
15	chr5:43380400-43396400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr5:43382200-43396400	Weak transcription	Primary hematopoietic stem cells	blood
17	chr5:43386000-43396800	Weak transcription	Esophagus	oesophagus
18	chr5:43387600-43396400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr5:43387800-43396200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr5:43388000-43396200	Weak transcription	Thymus	Thymus
21	chr5:43388000-43396400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr5:43388000-43396800	Weak transcription	Lung	lung
23	chr5:43388400-43389600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr5:43388400-43396400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr5:43388600-43389800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr5:43388600-43389800	Weak transcription	Primary T helper cells fromperipheralblood	blood
27	chr5:43388600-43389800	Enhancers	A549	lung
28	chr5:43388600-43395600	Weak transcription	Primary T cells fromperipheralblood	blood
29	chr5:43388600-43395600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr5:43388600-43396200	Weak transcription	Primary B cells from peripheral blood	blood
31	chr5:43388600-43396200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr5:43388600-43396200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr5:43388600-43396400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr5:43388800-43389800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr5:43388800-43389800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr5:43389000-43389600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr5:43389000-43389800	Weak transcription	Primary T helper cells PMA-I stimulated	--
38	chr5:43389000-43396200	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr5:43389000-43396400	Weak transcription	Duodenum Mucosa	Duodenum
40	chr5:43389200-43390000	Weak transcription	Primary T cells from cord blood	blood
41	chr5:43389200-43396200	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr5:43389200-43396600	Weak transcription	Rectal Mucosa Donor 31	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links