Variant report

Variant	rs28690096
Chromosome Location	chr6:145811100-145811101
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12110983	1.00[AFR][1000 genomes]
rs28528083	1.00[AFR][1000 genomes]
rs28572016	1.00[AFR][1000 genomes]
rs6932332	1.00[AFR][1000 genomes]
rs6936688	1.00[AFR][1000 genomes]
rs9497328	1.00[AFR][1000 genomes]
rs9497329	1.00[AFR][1000 genomes]
rs9497330	1.00[AFR][1000 genomes]
rs9497339	1.00[AFR][1000 genomes]
rs9497342	1.00[AFR][1000 genomes]
rs9497345	1.00[AFR][1000 genomes]
rs9497346	1.00[AFR][1000 genomes]
rs9497347	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604838	chr6:145709371-145841146	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv2763962	chr6:145802158-145817051	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145810800-145812400	Enhancers	Stomach Mucosa	stomach
2	chr6:145811000-145811800	Enhancers	HepG2	liver

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links