Variant report

Variant	rs9497342
Chromosome Location	chr6:145868763-145868764
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12110983	1.00[AFR][1000 genomes]
rs28528083	1.00[AFR][1000 genomes]
rs28572016	1.00[AFR][1000 genomes]
rs28690096	1.00[AFR][1000 genomes]
rs6932332	1.00[AFR][1000 genomes]
rs6936688	1.00[AFR][1000 genomes]
rs9497328	1.00[AFR][1000 genomes]
rs9497329	1.00[AFR][1000 genomes]
rs9497330	1.00[AFR][1000 genomes]
rs9497339	1.00[AFR][1000 genomes]
rs9497345	1.00[AFR][1000 genomes]
rs9497346	1.00[AFR][1000 genomes]
rs9497347	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886746	chr6:145815949-145920894	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv886747	chr6:145815949-145922777	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1028290	chr6:145819982-145911857	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv886748	chr6:145835917-145911730	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1021041	chr6:145836942-145887333	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1016881	chr6:145840961-145887333	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv538465	chr6:145840961-145887333	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145861400-145869200	Weak transcription	Left Ventricle	heart
2	chr6:145866200-145869400	Weak transcription	Hela-S3	cervix
3	chr6:145866400-145868800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:145867200-145868800	Enhancers	Skeletal Muscle Male	skeletal muscle
5	chr6:145868000-145869400	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr6:145868200-145868800	Enhancers	Psoas Muscle	Psoas
7	chr6:145868200-145869600	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr6:145868200-145870200	Enhancers	HMEC	breast
9	chr6:145868400-145870400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr6:145868400-145871000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr6:145868400-145871200	Enhancers	NHEK	skin
12	chr6:145868600-145869000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr6:145868600-145869000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr6:145868600-145869800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr6:145868600-145871000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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