Variant report

Variant	rs9497328
Chromosome Location	chr6:145828453-145828454
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12110983	1.00[AFR][1000 genomes]
rs28528083	1.00[AFR][1000 genomes]
rs28572016	1.00[AFR][1000 genomes]
rs28690096	1.00[AFR][1000 genomes]
rs6932332	1.00[AFR][1000 genomes]
rs6936688	1.00[AFR][1000 genomes]
rs9485013	1.00[YRI][hapmap]
rs9485014	1.00[YRI][hapmap]
rs9497329	1.00[AFR][1000 genomes]
rs9497330	1.00[AFR][1000 genomes]
rs9497339	1.00[AFR][1000 genomes]
rs9497342	1.00[AFR][1000 genomes]
rs9497345	1.00[AFR][1000 genomes]
rs9497346	1.00[AFR][1000 genomes]
rs9497347	1.00[AFR][1000 genomes]
rs9497377	1.00[YRI][hapmap]
rs9497394	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604838	chr6:145709371-145841146	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv886746	chr6:145815949-145920894	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv886747	chr6:145815949-145922777	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1028290	chr6:145819982-145911857	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145826400-145829200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr6:145827000-145829000	Enhancers	Hela-S3	cervix
3	chr6:145827200-145829400	Enhancers	Stomach Mucosa	stomach
4	chr6:145827800-145829000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:145827800-145829400	Enhancers	HMEC	breast
6	chr6:145828200-145828800	Weak transcription	Adipose Nuclei	Adipose

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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