Variant report

Variant	rs9485013
Chromosome Location	chr6:145953507-145953508
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:145952364..145954779-chr6:146053194..146056408,3	K562	blood:

Variant related genes	Relation type
ENSG00000112425	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs7740548	1.00[AFR][1000 genomes]
rs7757714	1.00[AFR][1000 genomes]
rs7763999	0.86[AFR][1000 genomes]
rs9322032	0.86[AFR][1000 genomes]
rs9485006	1.00[AFR][1000 genomes]
rs9485011	1.00[AFR][1000 genomes]
rs9485014	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9485023	1.00[YRI][hapmap]
rs9497317	1.00[AFR][1000 genomes]
rs9497321	1.00[AFR][1000 genomes]
rs9497340	1.00[AFR][1000 genomes]
rs9497341	1.00[AFR][1000 genomes]
rs9497351	0.86[AFR][1000 genomes]
rs9497353	1.00[AFR][1000 genomes]
rs9497356	1.00[AFR][1000 genomes]
rs9497367	1.00[AFR][1000 genomes]
rs9497369	1.00[AFR][1000 genomes]
rs9497370	1.00[AFR][1000 genomes]
rs9497371	1.00[AFR][1000 genomes]
rs9497372	1.00[AFR][1000 genomes]
rs9497373	1.00[AFR][1000 genomes]
rs9497375	1.00[AFR][1000 genomes]
rs9497377	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs9497383	1.00[AFR][1000 genomes]
rs9497394	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs9497397	1.00[AFR][1000 genomes]
rs9497399	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs9497400	1.00[AFR][1000 genomes]
rs9497409	1.00[YRI][hapmap]
rs9497415	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933782	chr6:145946431-145956458	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145941600-145954200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:145942400-145955400	Weak transcription	Esophagus	oesophagus
3	chr6:145945200-145955400	Weak transcription	Fetal Muscle Leg	muscle
4	chr6:145945800-145955000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr6:145946200-145955000	Weak transcription	Stomach Mucosa	stomach
6	chr6:145946400-145955600	Weak transcription	Colon Smooth Muscle	Colon
7	chr6:145946800-145955400	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr6:145947000-145955400	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr6:145947000-145955800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr6:145947200-145955400	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr6:145947400-145955400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr6:145948600-145954600	Weak transcription	Brain Anterior Caudate	brain
13	chr6:145948800-145955400	Weak transcription	Brain Substantia Nigra	brain
14	chr6:145948800-145955400	Weak transcription	Right Ventricle	heart
15	chr6:145948800-145962400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr6:145949000-145955400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr6:145949000-145955400	Weak transcription	Brain Angular Gyrus	brain
18	chr6:145949000-145955400	Weak transcription	Pancreas	Pancrea
19	chr6:145949000-145956200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr6:145949000-145968000	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr6:145949200-145955400	Weak transcription	Brain Hippocampus Middle	brain
22	chr6:145949200-145955600	Weak transcription	Fetal Thymus	thymus
23	chr6:145950400-145955400	Weak transcription	Spleen	Spleen
24	chr6:145950400-145955600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr6:145950600-145955400	Weak transcription	Primary B cells from peripheral blood	blood
26	chr6:145950800-145955000	Weak transcription	Liver	Liver
27	chr6:145950800-145955400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr6:145950800-145955600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr6:145950800-145977400	Weak transcription	Aorta	Aorta
30	chr6:145950800-145990600	Weak transcription	Primary B cells from cord blood	blood
31	chr6:145951000-145954600	Weak transcription	Stomach Smooth Muscle	stomach
32	chr6:145951000-145954800	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr6:145951000-145955000	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr6:145951000-145955400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr6:145951000-145955400	Weak transcription	Ovary	ovary
36	chr6:145951000-145959000	Weak transcription	Fetal Intestine Small	intestine
37	chr6:145951000-146003000	Weak transcription	Thymus	Thymus
38	chr6:145951200-145954000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr6:145951200-145955400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr6:145951200-145955400	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr6:145951200-145955400	Weak transcription	Lung	lung
42	chr6:145951200-145955800	Weak transcription	Primary hematopoietic stem cells	blood
43	chr6:145951400-146003000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr6:145951800-145955400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr6:145952000-145953600	Enhancers	Skeletal Muscle Male	skeletal muscle
46	chr6:145952000-145954400	Enhancers	Psoas Muscle	Psoas
47	chr6:145952200-145983200	Weak transcription	Primary T cells from cord blood	blood
48	chr6:145952600-145955800	Enhancers	Skeletal Muscle Female	skeletal muscle
49	chr6:145952800-145955000	Enhancers	Right Atrium	heart
50	chr6:145953000-145955400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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