Variant report
| Variant | rs9497317 |
|---|---|
| Chromosome Location | chr6:145792749-145792750 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:145792477..145793145-chr8:116957626..116958159,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs7740548 | 1.00[AFR][1000 genomes] |
| rs7757714 | 1.00[AFR][1000 genomes] |
| rs9485006 | 1.00[AFR][1000 genomes] |
| rs9485011 | 1.00[AFR][1000 genomes] |
| rs9485013 | 1.00[AFR][1000 genomes] |
| rs9485014 | 1.00[AFR][1000 genomes] |
| rs9497321 | 1.00[AFR][1000 genomes] |
| rs9497340 | 1.00[AFR][1000 genomes] |
| rs9497341 | 1.00[AFR][1000 genomes] |
| rs9497351 | 0.86[AFR][1000 genomes] |
| rs9497353 | 1.00[AFR][1000 genomes] |
| rs9497356 | 1.00[AFR][1000 genomes] |
| rs9497367 | 1.00[AFR][1000 genomes] |
| rs9497369 | 1.00[AFR][1000 genomes] |
| rs9497370 | 1.00[AFR][1000 genomes] |
| rs9497371 | 1.00[AFR][1000 genomes] |
| rs9497372 | 1.00[AFR][1000 genomes] |
| rs9497373 | 1.00[AFR][1000 genomes] |
| rs9497375 | 1.00[AFR][1000 genomes] |
| rs9497377 | 0.86[AFR][1000 genomes] |
| rs9497383 | 1.00[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1017166 | chr6:145677071-145808448 | Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv604838 | chr6:145709371-145841146 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:145768200-145803800 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
