Variant report
| Variant | rs9497369 |
|---|---|
| Chromosome Location | chr6:145930632-145930633 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:145929886..145932871-chr6:145934961..145937093,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs7740548 | 1.00[AFR][1000 genomes] |
| rs7757714 | 1.00[AFR][1000 genomes] |
| rs7763999 | 0.86[AFR][1000 genomes] |
| rs9322032 | 0.86[AFR][1000 genomes] |
| rs9485006 | 1.00[AFR][1000 genomes] |
| rs9485011 | 1.00[AFR][1000 genomes] |
| rs9485013 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes] |
| rs9485014 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes] |
| rs9485023 | 1.00[YRI][hapmap] |
| rs9497317 | 1.00[AFR][1000 genomes] |
| rs9497321 | 1.00[AFR][1000 genomes] |
| rs9497340 | 1.00[AFR][1000 genomes] |
| rs9497341 | 1.00[AFR][1000 genomes] |
| rs9497351 | 0.86[AFR][1000 genomes] |
| rs9497353 | 1.00[AFR][1000 genomes] |
| rs9497356 | 1.00[AFR][1000 genomes] |
| rs9497367 | 1.00[AFR][1000 genomes] |
| rs9497370 | 1.00[AFR][1000 genomes] |
| rs9497371 | 1.00[AFR][1000 genomes] |
| rs9497372 | 1.00[AFR][1000 genomes] |
| rs9497373 | 1.00[AFR][1000 genomes] |
| rs9497375 | 1.00[AFR][1000 genomes] |
| rs9497377 | 1.00[YRI][hapmap];0.86[AFR][1000 genomes] |
| rs9497383 | 1.00[AFR][1000 genomes] |
| rs9497394 | 1.00[YRI][hapmap];0.86[AFR][1000 genomes] |
| rs9497397 | 1.00[AFR][1000 genomes] |
| rs9497399 | 1.00[YRI][hapmap];0.86[AFR][1000 genomes] |
| rs9497400 | 1.00[AFR][1000 genomes] |
| rs9497409 | 1.00[YRI][hapmap] |
| rs9497415 | 1.00[YRI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv970064 | chr6:145921494-145933513 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:145924400-145948200 | Weak transcription | Left Ventricle | heart |
| 2 | chr6:145930600-145931000 | Enhancers | Adipose Nuclei | Adipose |
